Hsal016108.1
Basic Information
- Insect
- Hedya salicella
- Gene Symbol
- -
- Assembly
- GCA_905404275.1
- Location
- FR990099.1:36399375-36413377[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.11 12 7.9 1.7 1 23 270 292 270 292 0.96 2 17 0.0049 0.55 12.1 0.1 3 19 301 317 299 319 0.90 3 17 8e-05 0.0089 17.8 1.4 2 23 331 352 330 352 0.97 4 17 0.00048 0.054 15.3 0.3 3 23 360 380 359 380 0.97 5 17 0.77 86 5.2 4.5 1 15 388 402 388 411 0.73 6 17 1.8e-07 2.1e-05 26.1 2.6 1 23 416 438 416 438 0.98 7 17 0.0018 0.2 13.5 2.4 1 23 445 467 445 467 0.98 8 17 5.3e-06 0.00059 21.5 3.0 1 23 473 495 473 495 0.98 9 17 3.3e-05 0.0037 19.0 3.9 1 23 501 523 501 523 0.98 10 17 0.00044 0.05 15.4 1.2 2 23 529 551 528 551 0.94 11 17 1.5e-07 1.7e-05 26.4 0.5 2 23 560 581 559 581 0.98 12 17 0.11 13 7.8 0.3 2 13 588 599 588 604 0.81 13 17 0.18 20 7.2 6.5 1 23 639 662 639 662 0.92 14 17 2.2e-05 0.0025 19.5 0.1 1 23 667 689 667 689 0.97 15 17 0.0012 0.14 14.0 0.2 1 23 696 718 696 718 0.99 16 17 1.1e-05 0.0013 20.4 0.5 1 23 724 746 724 746 0.98 17 17 0.00051 0.057 15.2 0.2 1 23 752 774 752 774 0.97
Sequence Information
- Coding Sequence
- ATGGCTCGACTAGTGCTACTTTGCGCCCTAGGGCTTCTAATGTGTGTCTACGCAGCGCCagATTACAGTCGCGGCGGcaacggtgaagaaaaaaagatcgATGGTAGCACCGGAGACGTGAAAGCCGGTGGAAAGGACGACTATACTTTAAACATCGGTGATGGTGGAAAAGCCACTGAAGACAATGGCGGCAAAACTCACAGCGAAGGTACTCCAAGTGATAGTAACACTCCTGATCCAGACAATCACGGAAATTCTAGAAATGGAAACAATGATAGTACTAACGTCGATCAGAAAATTGCTCATGGTAATAACGGTGGCGGAAATGATTACAACTCAGGTGGAACTGATAAAGAAGGCAGTGGTGCTGTTAAGAATAGCGATAATAATAGTAACAATTTAAGCAACAAGGGAAATGGCCATGAGACAGGGTACGGTAGTGATGTAAATACTGGAAAGGAAGCTGGTCGATACAGACGTGATGAATCACGTGGTAAAGGAAATAATGGAGGTGGAGGTGGCAAAAATCATGGTGGAAATGGGAATGAAGGTGGCTCAGGTGGTGGTGGAAAAGACGGCAAAAACTCAGGTGGCGGGAATGGTGGACGGCACCGAAGATCTGCGGGCACGTTCGACTTCAAAAGTAAAGGTGGCAAAGGCGGGTCCGGAGGAGGCAAAGGTGGTGGCGGCGGTTACGGCGGTGGCGGTGGCCGCCGTGGTGGTGGTAAAAAACAACACAATGCAGCGTCTAGGAAGAAGTATGCAAAGCCAGTATCAAAACTGAAAAAGGCGAGAAAGAGGTTTAGCTTCACATGTGAACTGTGTTACAAGAAGTTTGGCTTTAGGGAGCGCTTTGAAGCCCACAAGCTGGAACATGAAGGGAAAACGACTTCAATATACTGTGCACCATGCAACAAAACCTTCACGACCTGGGGCGGGCTGAAACGCCACAACGACTGTGAGCACACTCGACTAACCCTCGACCAGTTGACGTGCAAATTGTGCTCCAAAGTGTTCAAGAGCCCACGGACACTCAGCATACACCGCAGCACACATGGAGAGAGGAAGCTGAGAATATGTGATGTGTGCGGGAAGGGATTCAAAAGTGATTTGACTTTGAAGTCTCACCTGGAAACACACATAGAAAACCGAGAGCGACGTTACACATGTCAACACTGCGGCAAGAAGTtcctcagcaaaaagacgtgcGCCTCGCACGCCTCGCGCCGCCACAGCGACCGCCGCTACATCTGCCACCACTGCGACTACCCCTTCACCGACAAGAGCAACCTCGCCAAGCATATACAGATCCACGAAGGAAAACAACAAACGCACAAATGTGATTTATGCTTGAAAACATTCGCGGCACACTCGTCTCTAGTCATCCACAGAAGAATTCACACCGGGGAAAAACCGTTTTCATGTAGCTATTGCCCGAAGAGCTTCTCAAATAAACGCATGTTAGTGGATCATCATAGAATACATACAGGCGAAAAACCACATAAGTGCACAGTGTGCGAGCAGAGATTCACGCAGCGCGGGACCATGAAACGACATATGAAAGTGCATGAAAGAgcgTCAATACAATGCAAGATATGCAGCAAAACCTTTAAACAATGGGCCGGTCTGCGCTGCCACATCGAATCGCTCCACTCGCTGCTGCCCTTCAAGGAGGTCACGTGTCCGGTGTGCTCCAAGGTCTTTAAGACCCCGTCCACGCTGCGGGTGCACCGGCGGACTCACGAACAGAGAAAAGTGCGGGTCTGCGACGAGTGTGGCAGGACCTTCAAGAGCGACGTCACTTTTAAGGCACAAGCAGCGTTGAGTGCGAGACTGCATCGAGTGCTGCAGGACGTTAGCGACGTCACTTTTAAGAATCACCTAGAGACCCATATAAAAAACCGCGAACGCAACTTTACCTGCGAGCACTGCGGCAAAAAGTACATCAGCAAGAAAACTTGCGCCAAGCACGTGTACCGGCGACACACGGACAGACAGTTCATATGCGGCTACTGCGCTTACATCTTCACCGACAAAGCCAACCTTATCCGACACATCATGCTCCATGAAGGAAGGCATCCGAAATATAAATGCGATATATGTTCACGGCTCTTGACTTCGCAGGCGTCTTTAGTTATACACAAAAGGATCCATAGCGGGGAGAAGCCGTTTCCTTGTAGGCATTGCGGGAAGAGTTTCTCCGATAAGGGCGTACTGGTGGAACATGAGCGAGTGCATACTGGCGAAAAGCCTTTTGCGTGCGTCGTGTGCGCGTTGAGGTTCGCTCGCCGCGGCTCCATGCGCAGGCATATGAAGGTGCACAAATAA
- Protein Sequence
- MARLVLLCALGLLMCVYAAPDYSRGGNGEEKKIDGSTGDVKAGGKDDYTLNIGDGGKATEDNGGKTHSEGTPSDSNTPDPDNHGNSRNGNNDSTNVDQKIAHGNNGGGNDYNSGGTDKEGSGAVKNSDNNSNNLSNKGNGHETGYGSDVNTGKEAGRYRRDESRGKGNNGGGGGKNHGGNGNEGGSGGGGKDGKNSGGGNGGRHRRSAGTFDFKSKGGKGGSGGGKGGGGGYGGGGGRRGGGKKQHNAASRKKYAKPVSKLKKARKRFSFTCELCYKKFGFRERFEAHKLEHEGKTTSIYCAPCNKTFTTWGGLKRHNDCEHTRLTLDQLTCKLCSKVFKSPRTLSIHRSTHGERKLRICDVCGKGFKSDLTLKSHLETHIENRERRYTCQHCGKKFLSKKTCASHASRRHSDRRYICHHCDYPFTDKSNLAKHIQIHEGKQQTHKCDLCLKTFAAHSSLVIHRRIHTGEKPFSCSYCPKSFSNKRMLVDHHRIHTGEKPHKCTVCEQRFTQRGTMKRHMKVHERASIQCKICSKTFKQWAGLRCHIESLHSLLPFKEVTCPVCSKVFKTPSTLRVHRRTHEQRKVRVCDECGRTFKSDVTFKAQAALSARLHRVLQDVSDVTFKNHLETHIKNRERNFTCEHCGKKYISKKTCAKHVYRRHTDRQFICGYCAYIFTDKANLIRHIMLHEGRHPKYKCDICSRLLTSQASLVIHKRIHSGEKPFPCRHCGKSFSDKGVLVEHERVHTGEKPFACVVCALRFARRGSMRRHMKVHK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -