Hsal042708.1
Basic Information
- Insect
- Hedya salicella
- Gene Symbol
- -
- Assembly
- GCA_905404275.1
- Location
- FR990120.1:1761628-1779643[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.16 18 7.4 2.8 1 23 320 343 320 343 0.98 2 28 1.7 1.9e+02 4.2 0.4 2 23 351 373 351 373 0.94 3 28 0.00043 0.049 15.5 2.6 2 23 405 427 405 427 0.96 4 28 0.0045 0.51 12.2 0.0 2 23 436 458 436 458 0.92 5 28 0.056 6.3 8.8 0.2 2 20 467 485 466 487 0.93 6 28 0.056 6.3 8.8 0.2 2 20 504 522 503 524 0.93 7 28 0.056 6.3 8.8 0.2 2 20 541 559 540 561 0.93 8 28 0.056 6.3 8.8 0.2 2 20 578 596 577 598 0.93 9 28 0.056 6.3 8.8 0.2 2 20 615 633 614 635 0.93 10 28 0.056 6.3 8.8 0.2 2 20 652 670 651 672 0.93 11 28 0.056 6.3 8.8 0.2 2 20 689 707 688 709 0.93 12 28 0.056 6.3 8.8 0.2 2 20 726 744 725 746 0.93 13 28 1.3 1.4e+02 4.6 0.1 3 23 759 780 758 781 0.92 14 28 0.0024 0.27 13.1 0.7 1 23 785 808 785 808 0.96 15 28 0.0012 0.13 14.1 7.1 1 23 839 861 839 861 0.97 16 28 1.5e-06 0.00016 23.2 0.6 1 23 867 889 867 889 0.99 17 28 0.00023 0.026 16.3 0.6 1 21 895 915 895 916 0.96 18 28 0.043 4.8 9.2 0.3 2 21 941 960 940 961 0.94 19 28 0.044 5 9.1 0.3 2 21 972 991 971 992 0.94 20 28 0.12 14 7.8 0.2 3 21 993 1011 991 1012 0.94 21 28 0.044 5 9.1 0.3 2 21 1025 1044 1024 1045 0.94 22 28 0.12 14 7.8 0.2 3 21 1046 1064 1044 1065 0.94 23 28 0.044 5 9.1 0.3 2 21 1078 1097 1077 1098 0.94 24 28 0.12 14 7.8 0.2 3 21 1099 1117 1097 1118 0.94 25 28 0.043 4.8 9.2 0.3 2 21 1129 1148 1128 1149 0.94 26 28 0.032 3.6 9.6 0.3 2 21 1160 1179 1159 1180 0.94 27 28 0.014 1.6 10.7 0.7 2 23 1193 1215 1192 1215 0.95 28 28 2.1e-07 2.3e-05 25.9 0.4 2 23 1223 1245 1222 1245 0.96
Sequence Information
- Coding Sequence
- ATGGACTCAGTGAAAGTGGAAGACGAGTTGGGTCTGCTGGCCTGTCGCATTTGTCTCGCTTTGGActtgaaaatgtataatatttgcGAGTCGAGTCTTGAGCAAACATTTTTAGAACTTATGGGCACTCCGCTGTCAGTGTGGGACGGGTTCCCGCAGCACGTGTGCGTGGTGTGCCGCGCGCTGCTGCTAAAAGCGCAGACGCTACGCGTGCGCTGCCACCGTGCTGACGCGCTGCTCAAGCAGGCACTTAGTCAACAACAAGTTATAACAAACGCATACATCCGCACCATCGACCGCGCAGCGCACAAACTAGTGCACACACTCTCAAAAGACTGCTTAAAAACTAGCATCCAGTATTACTACGAACGAGAAGACACACAGCCAGACATACCTGACAAACCTCCATGTAATGATATTGTTAAAGACGAGGTTGAACTACAAGAGGGTAATGGAAATAAAGCAGATGTTGACACAGAAACAGCCATACTACAAATTAATATAGTAGAAAGTGGCACAAAAGAGCTTGAAATAAATTTCGATGAAGTCGACCAcagtgatgatgacgatgaaacAAAAAGTATAGAAGCGTGTAAACATAAAATTGAAGTAGAACACGTCGAGGCTAAGCCTGCGTTAGCTGAAGTTAGCATAGTAACTAATAtagataaacaaattaaaaaaacaggTCTAAAAAGAGGCAGGCCTAAAAAGAAAGCCAAAGAAATGTTGCAACAAAGGCATAAAGTAAAAGCGAAGAAGAAAATTGGAGAAAATAAGGAAGTGAAAGAGGAAAAAGTTGAAGAAAAAGATACTGAACCGGGAAGGTTTTTTACTATAGAAGAAATAGAGGCGTTTATAAAGAAGCACAACTTTGAAATCCAGTATTTGACGGACGAAGAGATGGCGGAAGACATGGAGAGGCGGAAAGTGTCCGATCGGTACAAACACTGCAAGTATAAGTGCAATTTGTGCTATAAGGGCTTCCTGACGACCACAACGTTTGACAATCATATGAAGAAAGATCACGATCCGCGTAACGCGAAAAACGAGTGTCGTTTGTGTCGCGTGAGCTACCGATACGGGTTCTACCTGCGGCAACACGTGCAGAACGCACACAGGCTGCGCCTGCGTTGCGCAGAGTGCGGGGACGCCGTCTGGGGCAGGAAAGAGTGTGTGGCGCACGCGGCTCGGCACGCCGGTGCCACGCGACAGTGCAAGTACTGCGGGAAACACTTTCTCAAGAAGTCGTCATATACATGGCACATGCGCGCTGCACACCCTGTTGAGAACGCGGCGAGCGGCTCCTGCGAGCTTTGTGGGGAAATATATACGAGTCCCAAGGGTCTGCGGGCGCATAAGCTACTGGCGCATAATAAGCGCGCGACGCCCGACCTGCAGTGCGGGCGCTGCCGCGCGCAGTTCGACAACAAGGAGGCGCTGCGGAGACACCGGGAGCTGCAAGCGGACGACAAGTGCGACCCCGACATGAGTGCGACGCCCGACCTGCAGTGCGGGCGCTGCCGCGCGCAGTTCGACAACAAGGAGGCGCTGCGGAGACACCGGGAGCTGCAAGCGGACGACAAGTGCGACCCCGACATGAGTGCGACGCCCGACCTGCAGTGCGGGCGCTGCCGCGCGCAGTTCGACAACAAGGAGGCGCTGCGGAGACACCGGGAGCTGCAAGCGGACGACAAGTGCGACCCCGACATGAGTGCGACGCCCGACCTGCAGTGCGGGCGCTGCCGCGCGCAGTTCGACAACAAGGAGGCGCTGCGGAGACACCGGGAGCTGCAAGCGGACGACAAGTGCGACCCCGACATGAGTGCGACGCCCGACCTGCAGTGCGGGCGCTGCCGCGCGCAGTTCGACAACAAGGAGGCGCTGCGGAGACACCGGGAGCTGCAAGCGGACGACAAGTGCGACCCCGACATGAGTGCGACGCCCGACCTGCAGTGCGGGCGCTGCCGCGCGCAGTTCGACAACAAGGAGGCGCTGCGGAGACACCGGGAGCTGCAAGTGGACGACAAGTGCGACCCCGACATGAGTGCGACGCCCGACCTGCAGTGCGGGCGCTGCCGCGCGCAGTTCGACAACAAGGAGGCGCTGCGGAGACACCGGGAGCTGCAAGTGGACGACAAGTGCGACCCCGACATGAGTGCGACGCCCGACCTGCAGTGCGGGCGCTGCCGCGCGCAGTTCGACAACAAGGAGGCGCTGCGGAGACACCGGGAGCTGCAAGTGGACGACAAGTGCGACCCCGACATGAGCGCATGCGCGGCGTGCGGCGCGGCCTGCGCGGGCGCGGAGGCGCTGCTGCGGCACCTGCGCGCCGCGCACCACAGGGACATCTTCACCTGCGACGCCTGTAATAAATCGTTCCTGTCCAAGTCCTCCCTCTCCACGCACATCGACCGCGTGCACCTCGGCATCAGGCCGCTGCAGCATCACCAGCTGACACAGTACCGCAAGCACAGCAAGCGGCCCGTGCAGCCCCGCCCACGGGGCCACGACCACATGTGCGAACACTGTGGGAAGGCCTACACGACACACCAGTTTCTGAAGAACCACCAGATGAGCCACACAGGTGAGCGCCCGTATAAGTGCGACCGCTGTCCCAAGGGATTCACCACGGCTGTGCAACTCACGTGGCACACACGGACACACACGGGTGAACGACCGTACCAGTGCGACCAGTGCCACCAGGCGTTCAGTCTGGAGGGCAACCTGCGGCGGCACCGTAAGGCGGCGGTCAGTCTGGAGGGCAACCTGCGGCGCCACCGTAAGGCGGTGAgtgtcacacacacacacacacacacgcagtGCGACCAGTGCCACCAGGCGGTCAGTCTGGAGGGCAACCTGCGGCGCCACCGTAAGGCGGTGAgtgtcacacacacacacacacacacgcagtGCGACCAGTGCCACCAGGCGGTCAGTCTGGAGGGCAACCTGCGGCGCCACCGTAAGGCGTGCGACCAGTGCCACCAGGCGGTCAGTCTGGAGGGCAACCTGCGGCGCCACCGTAAGGCGGTGAgtgtcacacacacacacacacacacacacacgcagtGCGACCAGTGCCACCAGGCGGTCAGTCTGGAGGGCAACCTGCGGCGCCACCGTAAGGCGTGCGACCAGTGCCACCAGGCGGTCAGTCTGGAGGGCAACCTGCGGCGCCACCGTAAGGCGGTGAgtgtcacacacacacacacacacacacacacgcagtGCGACCAGTGCCACCAGGCGGTCAGTCTGGAGGGCAACCTGCGGCGCCACCGTAAGGCGtGCGACCAGTGCCACCAGGCGGTCAGTCTGGAGGGCAACCTGCGGCGCCATCGTAAGGCGGTGAgtgtcacacacacacacacacacacgcagtGCGACCAGTGCCACCAGGCGGTCAGTCTGGAGGGCAACCTGCGGCGCCACCGTAAGGCGGTGAgtgtcacacacacacacacacacacgcagtGCGACCAGTGCCACCAGGCGGTCAGTCTGGAGGGCAACCTGCGGCGCCACCGTAAGGTGGTGAgtgtcacacacacacacacacacacacacacgcagtGCGACCAGTGCCACCAGGCGGTCAGTCTGGAGGGCAACCTGCGGCGCCATCGTAAGGCGGTACACCTCGGACTCCGCAAGAACGTGCCCTGCCCGCGCTGCGACAAGACCTTCTCCACGAACTCTACTCTGAAGCTCCACATCCGCACCGTCCACGACGGCGCGCCCGGACCGCGGCGCGACCGCCGGCGGCACAAGCAGCGGGGAGCGCCGGCGGAGCCCGGGAGGGGCTCGGGCAGGCCTCTGTAA
- Protein Sequence
- MDSVKVEDELGLLACRICLALDLKMYNICESSLEQTFLELMGTPLSVWDGFPQHVCVVCRALLLKAQTLRVRCHRADALLKQALSQQQVITNAYIRTIDRAAHKLVHTLSKDCLKTSIQYYYEREDTQPDIPDKPPCNDIVKDEVELQEGNGNKADVDTETAILQINIVESGTKELEINFDEVDHSDDDDETKSIEACKHKIEVEHVEAKPALAEVSIVTNIDKQIKKTGLKRGRPKKKAKEMLQQRHKVKAKKKIGENKEVKEEKVEEKDTEPGRFFTIEEIEAFIKKHNFEIQYLTDEEMAEDMERRKVSDRYKHCKYKCNLCYKGFLTTTTFDNHMKKDHDPRNAKNECRLCRVSYRYGFYLRQHVQNAHRLRLRCAECGDAVWGRKECVAHAARHAGATRQCKYCGKHFLKKSSYTWHMRAAHPVENAASGSCELCGEIYTSPKGLRAHKLLAHNKRATPDLQCGRCRAQFDNKEALRRHRELQADDKCDPDMSATPDLQCGRCRAQFDNKEALRRHRELQADDKCDPDMSATPDLQCGRCRAQFDNKEALRRHRELQADDKCDPDMSATPDLQCGRCRAQFDNKEALRRHRELQADDKCDPDMSATPDLQCGRCRAQFDNKEALRRHRELQADDKCDPDMSATPDLQCGRCRAQFDNKEALRRHRELQVDDKCDPDMSATPDLQCGRCRAQFDNKEALRRHRELQVDDKCDPDMSATPDLQCGRCRAQFDNKEALRRHRELQVDDKCDPDMSACAACGAACAGAEALLRHLRAAHHRDIFTCDACNKSFLSKSSLSTHIDRVHLGIRPLQHHQLTQYRKHSKRPVQPRPRGHDHMCEHCGKAYTTHQFLKNHQMSHTGERPYKCDRCPKGFTTAVQLTWHTRTHTGERPYQCDQCHQAFSLEGNLRRHRKAAVSLEGNLRRHRKAVSVTHTHTHTQCDQCHQAVSLEGNLRRHRKAVSVTHTHTHTQCDQCHQAVSLEGNLRRHRKACDQCHQAVSLEGNLRRHRKAVSVTHTHTHTHTQCDQCHQAVSLEGNLRRHRKACDQCHQAVSLEGNLRRHRKAVSVTHTHTHTHTQCDQCHQAVSLEGNLRRHRKACDQCHQAVSLEGNLRRHRKAVSVTHTHTHTQCDQCHQAVSLEGNLRRHRKAVSVTHTHTHTQCDQCHQAVSLEGNLRRHRKVVSVTHTHTHTHTQCDQCHQAVSLEGNLRRHRKAVHLGLRKNVPCPRCDKTFSTNSTLKLHIRTVHDGAPGPRRDRRRHKQRGAPAEPGRGSGRPL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -