Basic Information

Insect: Hedya salicella
Gene Symbol: -
Assembly: GCA_905404275.1
Location: FR990097.1:43773773-43784716[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0001 0.011 17.5 0.6 1 23 232 255 232 255 0.94

2 15 0.00014 0.015 17.0 0.8 1 23 268 290 268 290 0.98

3 15 4.5 5.1e+02 2.8 9.3 1 23 296 318 296 318 0.98

4 15 0.00034 0.038 15.8 0.3 1 19 324 342 324 346 0.95

5 15 8.8e-08 9.9e-06 27.1 0.7 1 23 352 374 352 374 0.98

6 15 1.5e-08 1.7e-06 29.5 2.1 1 23 380 402 380 402 0.98

7 15 5.7e-06 0.00064 21.4 3.7 1 23 408 430 408 430 0.98

8 15 1.4e-07 1.5e-05 26.5 1.6 1 23 436 458 436 458 0.98

9 15 2.1e-05 0.0024 19.6 5.3 1 23 464 486 464 486 0.98

10 15 3e-07 3.4e-05 25.4 1.7 1 23 492 514 492 514 0.98

11 15 3e-07 3.4e-05 25.4 1.1 1 23 520 542 520 542 0.98

12 15 4.3e-06 0.00048 21.8 3.3 1 23 548 570 548 570 0.98

13 15 3.4e-07 3.8e-05 25.2 1.2 1 23 576 598 576 598 0.98

14 15 8.3e-06 0.00093 20.9 0.5 1 23 604 626 604 626 0.98

15 15 1.1e-07 1.3e-05 26.7 2.0 1 23 632 654 632 654 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0001	0.011	17.5	0.6	1	23	232	255	232	255	0.94
2	15	0.00014	0.015	17.0	0.8	1	23	268	290	268	290	0.98
3	15	4.5	5.1e+02	2.8	9.3	1	23	296	318	296	318	0.98
4	15	0.00034	0.038	15.8	0.3	1	19	324	342	324	346	0.95
5	15	8.8e-08	9.9e-06	27.1	0.7	1	23	352	374	352	374	0.98
6	15	1.5e-08	1.7e-06	29.5	2.1	1	23	380	402	380	402	0.98
7	15	5.7e-06	0.00064	21.4	3.7	1	23	408	430	408	430	0.98
8	15	1.4e-07	1.5e-05	26.5	1.6	1	23	436	458	436	458	0.98
9	15	2.1e-05	0.0024	19.6	5.3	1	23	464	486	464	486	0.98
10	15	3e-07	3.4e-05	25.4	1.7	1	23	492	514	492	514	0.98
11	15	3e-07	3.4e-05	25.4	1.1	1	23	520	542	520	542	0.98
12	15	4.3e-06	0.00048	21.8	3.3	1	23	548	570	548	570	0.98
13	15	3.4e-07	3.8e-05	25.2	1.2	1	23	576	598	576	598	0.98
14	15	8.3e-06	0.00093	20.9	0.5	1	23	604	626	604	626	0.98
15	15	1.1e-07	1.3e-05	26.7	2.0	1	23	632	654	632	654	0.98

Sequence Information

Coding Sequence: ATGAGTACTATTATCGATGGCGTCGTTAATGACGCGCTATTATCATGTCCCTGTTGTTTTACAAGGCCGCAATTGTTTACAAACGTGGACAAATTTGCGATATATTCAGACATGCTCAAAGAATGCTTCGATATACAGCTAGTCGTTGGTACTGACAAATATGGTATCTGTGAGGTGTGTGTCGGCCGCCTGCGAGACGCGAGCAATTTCAAGCTGCAAGTGCAGCACAGCCAGAAGGAGCTGCTGGAGTGGCTGCAGAGAGTACAAATCTTAGACAAAGAACCTGTTGTCAAATCTGAAGTAGCTGACAGTGATGGGGTGTGCGACAACCAATTAGaTGACGAGGCTGCAGTGACAATGGACCTCAAGAACGAGGCAAGTGAGGATTTAGTGATATACAAAGAACCTGCTGTCAAGTCTGAGGTAGATGACGATGATGGGGTGTGCGACAACCTGTTAGGTGGAGAACGTGATGTTAAGTCAGAGGAATATGATGGTGGGACGAGTGATAACTCGTTAGATGATGGAGCCCCATCTGAGATGGCCGACACTGACGGGGCGCGGGAGGAGTTTATTACACTCGCATGTCCCGGGCTGGAGGGCGCGGGGGCTCCACTGTCCGCCTGCGCCAGGGAACAGCTCGCCATGACTTGTTCCGTGGGTCTCGAGCGCCTCCGCGGCGATAAGACACCGCACGCGTGCCCCACATGTCCCGCGATATTTGACCACAAATCCAGTCTCGCCACGCACATGAAGGAAGTGCACTGTGGCGGGTTTGGGGTTCGCGCCGACGAAGAAGCGTACACATGCGACGCTTGCGGGAAACGGTACGCACGGAAGTTAAGTTTCATAAATCACATACAGAAACACGTGACGAAGACGCCTTACTGTTGCAAATTATGTTCAAAACAGTATTCTTGTAAAAACCTCTTCCTTCAACATAGACGTACTCACTTGGCGAACAAAGCGTACTCCTGCACAATATGTAAAAGGGAATTCAAAGCAAAATCTGATTTGATAAGACACGACGCCGTACATACCGGGCAGAAACCTTACatctgtgaaatatgtaacaagcaattcacACGGAAAGGCAACTTGAAGGAACACCTCAGAATACATTCAGGACAGAAAtcttacagctgtgaaatatgtaacaagcaatttacACGGAATAGCAACTTGAAGAAGCACCTCAGAATACATTCAGGACAGAAAtcttacagctgtgaaatatgtaacaagcaatttacACGGAAAGACTGCTTGAAGCTGCACCTCAAAATACATACAGGACAGAAACCTTACaactgtgaaatatgtaacaagacATTCACACTGAAAAGCAACTTGAAGTCGCACCTCAGAATACATACAGGAgagaaaccttacagctgtgatATATGTAACAGGCATTTCACCCAGAAAAGCTGCTTGAACGAGCACCTCAAAATACATTCaggacagaaaccttacagctgtgaaatatgtaacaagcaatttacACGGAAAGACTACTTGAAGCTGCACCTCAGGATACATACaggacagaaaccttacagctgtgaaatatgtaacaagcgaTTCTCACTGAATAGCAACTTGAAGCTGCACCTCAGAATACATACAGGAGAAAAAtcttacagctgtgaaatatgtaacaagcaattcacACAGAAAGGCTACTTGAAGCTACACCACAGAATACATACAGGAgagaaaccttacagctgtgaaatatgtaacaagcaattcacACAGAAAAGCAGCTTAAAGGGGCACCTCAGAATACATACGGGGCAGAAATCTTACAGCTGTGAAATTTGTAACAAGCAATTCAGATGGAATGATAACTTGAAGTGGCACCTCAGAATACATACAGGACAGAAATCGTACAgttgtgaaatatgtaacaagcgaTTCACACAGAAAAGCTACTTGAAGCTGCACCTCAGAGTGCATACACGATAG
Protein Sequence: MSTIIDGVVNDALLSCPCCFTRPQLFTNVDKFAIYSDMLKECFDIQLVVGTDKYGICEVCVGRLRDASNFKLQVQHSQKELLEWLQRVQILDKEPVVKSEVADSDGVCDNQLDDEAAVTMDLKNEASEDLVIYKEPAVKSEVDDDDGVCDNLLGGERDVKSEEYDGGTSDNSLDDGAPSEMADTDGAREEFITLACPGLEGAGAPLSACAREQLAMTCSVGLERLRGDKTPHACPTCPAIFDHKSSLATHMKEVHCGGFGVRADEEAYTCDACGKRYARKLSFINHIQKHVTKTPYCCKLCSKQYSCKNLFLQHRRTHLANKAYSCTICKREFKAKSDLIRHDAVHTGQKPYICEICNKQFTRKGNLKEHLRIHSGQKSYSCEICNKQFTRNSNLKKHLRIHSGQKSYSCEICNKQFTRKDCLKLHLKIHTGQKPYNCEICNKTFTLKSNLKSHLRIHTGEKPYSCDICNRHFTQKSCLNEHLKIHSGQKPYSCEICNKQFTRKDYLKLHLRIHTGQKPYSCEICNKRFSLNSNLKLHLRIHTGEKSYSCEICNKQFTQKGYLKLHHRIHTGEKPYSCEICNKQFTQKSSLKGHLRIHTGQKSYSCEICNKQFRWNDNLKWHLRIHTGQKSYSCEICNKRFTQKSYLKLHLRVHTR*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -