Hsal033206.1
Basic Information
- Insect
- Hedya salicella
- Gene Symbol
- -
- Assembly
- GCA_905404275.1
- Location
- FR990111.1:14237630-14238322[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.2e-08 8.5e-05 23.5 0.1 2 40 17 55 16 60 0.87 2 2 5.4 8.9e+03 -2.1 0.0 17 23 133 139 129 139 0.83
Sequence Information
- Coding Sequence
- ATGTCGCCGCCACTCCAGCCAGTTAAGAGAACGCGGGCTCGGTGGTCAGAGAATAGTTTGGCCTCGGCCATGGCTGCTGTAAAAAACGGCGATCTTACACATCGAGAAGCAGCTGCTCGGTATAATGTACCTCGCAGAACTCACCGAAACCATTTAAAATCCGGAAAATCTAAGAAAGAAATTGGACGGGCTCCAAcattgtcaaagttacaagaaGAAAATTTAGTGCAAAGGATTATGCAATTTTCCAAAATATATGGCATGCCGTTAACGCCACAAATCATTCGAGGACAAGCTTACAAATTCTGTGAGAAGCAGggaattaaaaacaatttcaagaaaaatactggcagaGCGGGCAGGGACTGGTTCAACATTATGAAACGCAACCCCAATATTTCAATCCGCAAGGCACAACTTATGAATCCAGCAAGAGCGCCGAAGCTGAACAAGCCCATAATGCGGCATCACTTCCAAGAAGTAAGGAAATTCTACGATGAACTCGACATCCCTAATCACCCAGAAAAATTCTACaacattgatgaaaaagggTACCGGCTAACTATCCGTCACCAGCAAAAAGTTTTAGCTGAAAAAGGCAAACGCAGGGTTCACATGGTAGCACAAGAACACGGTGAAAAGGTAACCATTGCAATGTGTGTTAGTGCCGCAGGGAATAGCATACCCCGATGA
- Protein Sequence
- MSPPLQPVKRTRARWSENSLASAMAAVKNGDLTHREAAARYNVPRRTHRNHLKSGKSKKEIGRAPTLSKLQEENLVQRIMQFSKIYGMPLTPQIIRGQAYKFCEKQGIKNNFKKNTGRAGRDWFNIMKRNPNISIRKAQLMNPARAPKLNKPIMRHHFQEVRKFYDELDIPNHPEKFYNIDEKGYRLTIRHQQKVLAEKGKRRVHMVAQEHGEKVTIAMCVSAAGNSIPR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01091656;
- 90% Identity
- -
- 80% Identity
- -