Hsal040930.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hedya salicella
Gene Symbol
-
Assembly
GCA_905404275.1
Location
FR990118.1:318761-331058[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.32 5.3e+02 1.8 0.0 21 37 105 122 102 126 0.78
2 13 0.34 5.5e+02 1.7 0.0 21 37 170 187 168 191 0.78
3 13 0.34 5.5e+02 1.7 0.0 21 37 235 252 233 256 0.78
4 13 0.34 5.5e+02 1.7 0.0 21 37 300 317 298 321 0.78
5 13 0.34 5.5e+02 1.7 0.0 21 37 382 399 380 403 0.78
6 13 0.32 5.3e+02 1.8 0.0 21 37 441 458 438 462 0.78
7 13 0.34 5.5e+02 1.7 0.0 21 37 506 523 504 527 0.78
8 13 0.34 5.5e+02 1.7 0.0 21 37 571 588 569 592 0.78
9 13 0.34 5.5e+02 1.7 0.0 21 37 636 653 634 657 0.78
10 13 0.34 5.5e+02 1.7 0.0 21 37 718 735 716 739 0.78
11 13 0.26 4.3e+02 2.1 0.0 21 39 777 796 774 799 0.80
12 13 0.34 5.5e+02 1.7 0.0 21 37 929 946 927 950 0.78
13 13 0.34 5.5e+02 1.7 0.0 21 37 994 1011 992 1015 0.78

Sequence Information

Coding Sequence
ATGGATGCATTTAAAAACTTCCGCATCGTGCATAGCCGCGGGCACTTCGATGATGACAATACAATCTCCGTTTTTCATGAGGAAGCGGGGCAGTACGCTCTGGTGCGGGGCGAGCAGGCGGGGGCGGGGCGAGCGGcggcgcgcctgcgcgcgctgctggcggagctggcggcgctgcgcgcgcgcgtgcgCGAGCCCGACCGCGCCGCCTTCGACGCGCGCAcgcagcgcgcacgcgacctcacgctgcaggccatcatggactacctagGTGGGGGCGGGGCGAGCAgcggcgcagcgcgcacgcgaccTCACGCTGCAGGCCATCATGGACTACCTAGGTCAGGCTCACTACACGCACTGGTGCGGGGCGAGCAGGTGGGGGCGGGGCGAGCAgcggcgcagcgcgcacgcgacctcacgctgcaggccatcatggactacctaggtcaggctcactacacgcactggtgcggggcgagcagcggcgcagcgcgcacgcgaccTCACGCTGCAGGCCATCATGGACTACCTAGGTCAGGCTCACTACACGCACTGGTGCGGGGCGAGCAGGTGGGGGCGGGGCGAGCAgcggcgcagcgcgcacgcgacctcacgctgcaggccatcatggactacctaggtcaggctcactacacgcactggtgcggggcgagcagcggcgcagcgcgcacgcgaccTCACGCTGCAGGCCATCATGGACTACCTAGGTCAGGCTCACTACACGCACTGGTGCGGGGCGAGCAGGTGGGGGCGGGGCGAGCAgcggcgcagcgcgcacgcgaccTCACGCTGCAGGCCATCATGGACTACCTAGGTCAGGCTCACTACACGCACTGGTGCGGGGCGAGCAGcggcgcagcgcgcacgcgaccTCACGCTGCAGGCCATCATGGACTACCTAGGTCAGGCTCACTACACGCACTGGTGCGGGGCGAGCAGGTGGGGGCGGGGCGAGCAgcggcgcagcgcgcacgcgacctcacgctgcaggccatcatggactacctagcggcgcagcgcgcacgcgacctcacgctgcaggccatcatggactacctaggtcaggctcactacacgcactggtgcggggcgagcagcggcgcagcgcgcacgcgaccTCACGCTGCAGGCCATCATGGACTACCTAGGTCAGGCTCACTACACGCACTGGTGCGGGGCGAGCAGGTGGGGGCGGGGCGAGCAgcggcgcagcgcgcacgcgacctcacgctgcaggccatcatggactacctagGTGGGGGCGGGGCGAGCAgcggcgcagcgcgcacgcgaccTCACGCTGCAGGCCATCATGGACTACCTAGGTCAGGCTCACTACACGCACTGGTGCGGGGCGAGCAGGTGGGGGCGGGGCGAGCAgcggcgcagcgcgcacgcgacctcacgctgcaggccatcatggactacctaggtcaggctcactacacgcactggtgcggggcgagcagcggcgcagcgcgcacgcgaccTCACGCTGCAGGCCATCATGGACTACCTAGGTCAGGCTCACTACACGCACTGGTGCGGGGCGAGCAGGTGGGGGCGGGGCGAGCAgcggcgcagcgcgcacgcgacctcacgctgcaggccatcatggactacctaggtcaggctcactacacgcactggtgcggggcgagcagcggcgcagcgcgcacgcgaccTCACGCTGCAGGCCATCATGGACTACCTAGGTCAGGCTCACTACACGCACTGGTGCGGGGCGAGCAGGTGGGGGCGGGGCGAGCAgcggcgcagcgcgcacgcgacctcacgctgcaggccatcatggactacctaggtcaggctcactacacgcactggtgcggggcgagcagcggcgcagcgcgcacgcgaccTCACGCTGCAGGCCATCATGGACTACCTAGGTCAGGCTCACTACACGCACTGGTGCGGGGCGAGCAGGTGGGGGCGGGGCGAGCAgcggcgcagcgcgcacgcgacctcacgctgcaggccatcatggactacctagcgacgcagcgcgcacgcgacctcacgctgcaggccatcatggactacctaggtcaggctcactacacgcactggtgcggggcgagcagcggcgcagcgcgcacgcgaccTCACGCTGCAGGCCATCATGGACTACCTAGGTCAGGCTCACTACACGCACTGGTGCGGGGCGAGCAGGTGGGGGCGGGGCGAGCAgcggcgcagcgcgcacgcgacctcacgctgcaggccatcatggactacctagGTGGGGGCGGGGCGAGCAgcggcgcagcgcgcacgcgaccTCACGCTGCAGGCCATCATGGACTACCTAGGTCAGGCTCACTACACGCACTGGTGCGGGGCGGGCAGGTGGGGGCGGGGCGAGCAgcggcgcagcgcgcacgcgaccTCACGCTGCAGGCCATCATGGACTACCTAGGTCAGGCTCACTACACGCACTGGTGCGGGGCGAGCAGTGCGGGGCGAGCAgcggcgcagcgcgcacgcgaccTCACGCTGCAGGCCATCATGGACTACCTAGGTCAGGCTCACTACACGCACTGGTGCGGGGCGAGCAGGTGGGGGCGGGGGCGAGCAgcggcgcagcgcgcacgcgacctcacgctgcaggccatcatggcctacctagcggcgcagcgcgcacgcgacctcacgctgcaggccatcatggactacctaggtcaggctcactacacgcactggtgcggggcgagcagcggcgcagcgcgcacgcgaccTCACGCTGCAGGCCATCATGGACTACCTAGGTCAGGCTCACTACACGCACTGGTGCGGGGCGAGCAGGTGGGGGCGGGGCGAGCAgcggcgcagcgcgcacgcgacctcacgctgcaggccatcatggactacctaggtcaggctcactacacgcactggtgcggggcgagcagcggcgcagcgcgcacgcgaccTCACGCTGCGGGCCATCATGGACTACCTAGGTCAGGCTCACTACACGCACTGGTGCGGGGCGAGCAGGTGGGGGCGGGGCGAGCAgcggcgcagcgcgcacgcgaccTCACGCTGCAGGCCGTCATGGACTACCTAGAGTCGTCACCGGTGAACATGCAGCGCGGGGCGGAGCCTGCGTGCGCGGAGGTGGGCAGCGCGGTGTCCACGGAGTCGGTGGGCGTGGTCGCGCATGCGCGTGCGCGCCGCGGCGGCGACGACTGCGACGTGCCCGTGCTGCAGCTGCAGATCGACGACCGGGTGCGTGCAGTCTGA
Protein Sequence
MDAFKNFRIVHSRGHFDDDNTISVFHEEAGQYALVRGEQAGAGRAAARLRALLAELAALRARVREPDRAAFDARTQRARDLTLQAIMDYLGGGGASSGAARTRPHAAGHHGLPRSGSLHALVRGEQVGAGRAAAQRARDLTLQAIMDYLGQAHYTHWCGASSGAARTRPHAAGHHGLPRSGSLHALVRGEQVGAGRAAAQRARDLTLQAIMDYLGQAHYTHWCGASSGAARTRPHAAGHHGLPRSGSLHALVRGEQVGAGRAAAQRARDLTLQAIMDYLGQAHYTHWCGASSGAARTRPHAAGHHGLPRSGSLHALVRGEQVGAGRAAAQRARDLTLQAIMDYLAAQRARDLTLQAIMDYLGQAHYTHWCGASSGAARTRPHAAGHHGLPRSGSLHALVRGEQVGAGRAAAQRARDLTLQAIMDYLGGGGASSGAARTRPHAAGHHGLPRSGSLHALVRGEQVGAGRAAAQRARDLTLQAIMDYLGQAHYTHWCGASSGAARTRPHAAGHHGLPRSGSLHALVRGEQVGAGRAAAQRARDLTLQAIMDYLGQAHYTHWCGASSGAARTRPHAAGHHGLPRSGSLHALVRGEQVGAGRAAAQRARDLTLQAIMDYLGQAHYTHWCGASSGAARTRPHAAGHHGLPRSGSLHALVRGEQVGAGRAAAQRARDLTLQAIMDYLATQRARDLTLQAIMDYLGQAHYTHWCGASSGAARTRPHAAGHHGLPRSGSLHALVRGEQVGAGRAAAQRARDLTLQAIMDYLGGGGASSGAARTRPHAAGHHGLPRSGSLHALVRGGQVGAGRAAAQRARDLTLQAIMDYLGQAHYTHWCGASSAGRAAAQRARDLTLQAIMDYLGQAHYTHWCGASRWGRGRAAAQRARDLTLQAIMAYLAAQRARDLTLQAIMDYLGQAHYTHWCGASSGAARTRPHAAGHHGLPRSGSLHALVRGEQVGAGRAAAQRARDLTLQAIMDYLGQAHYTHWCGASSGAARTRPHAAGHHGLPRSGSLHALVRGEQVGAGRAAAQRARDLTLQAVMDYLESSPVNMQRGAEPACAEVGSAVSTESVGVVAHARARRGGDDCDVPVLQLQIDDRVRAV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-