Hsal010394.1
Basic Information
- Insect
- Hedya salicella
- Gene Symbol
- -
- Assembly
- GCA_905404275.1
- Location
- FR990097.1:35522134-35525020[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-07 0.00036 21.5 0.0 3 39 24 60 22 65 0.90 2 2 1.2e-09 2e-06 28.8 0.0 2 40 100 138 99 142 0.92
Sequence Information
- Coding Sequence
- ATGAGAAaTATCTGCGATACTAACAAATTGAAACTGAAACGAACGAAACCGAGGAGAATTTATACCGCCGAGTCTTTGAAGCGCGCAATATATGATATAAAAGTTAAAGGTAATGGACTCAGGGAGACTTCGAGACTTTACGGAATACCGGCGCCCACAATCCACCGACGACTTCAAGTAGACGAAGACGGCATGATGCCTAACGGACCCAAACCGTTATTAGAAGTATTACTGAGAGAGGAGACAGGAACTAAAGTTACTAGAAAGAAAATCAAACGTACTAAAAGATTATATACTAGTGATGCATTGGAAAATGCTTTACATGATGTCAGTGTAAAAGGAAAAGGGATTAATGAGACGTCGAAAGTTTATGGAATACCTCGACCTACGATCTATCGACGGCTTCGATTGAATGAATACGGTCAAATGAGAATGGGACCAGATCTTGTATTAGGAAACGATGGGGAAGATCATTTAAAAGACATAATTATAGATAAAAGTAAATCTGGTACCGTCACGAAAGATGACATTCTTGATACTGCGCAGAAAATCGTAGAGGATTCCGGGAAGCAATTCAAAAATGGCCGACCTGGAATTAAATGGTATAAAGGATTTTTAAAACGACACCCAGACTTGAAAGGAATTGTGAAAAGATCTGCGAAGAGCCGGGATGATACGGATTAA
- Protein Sequence
- MRNICDTNKLKLKRTKPRRIYTAESLKRAIYDIKVKGNGLRETSRLYGIPAPTIHRRLQVDEDGMMPNGPKPLLEVLLREETGTKVTRKKIKRTKRLYTSDALENALHDVSVKGKGINETSKVYGIPRPTIYRRLRLNEYGQMRMGPDLVLGNDGEDHLKDIIIDKSKSGTVTKDDILDTAQKIVEDSGKQFKNGRPGIKWYKGFLKRHPDLKGIVKRSAKSRDDTD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -