Hdys033928.1
Basic Information
- Insect
- Hecatera dysodea
- Gene Symbol
- -
- Assembly
- GCA_905332915.1
- Location
- HG995317.1:4591739-4609870[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 9.4 1e+03 1.6 0.1 1 9 52 60 52 69 0.77 2 12 0.095 10 7.9 0.1 1 23 203 226 203 226 0.97 3 12 0.61 65 5.3 0.8 1 23 233 255 233 255 0.96 4 12 1 1.1e+02 4.6 0.3 2 23 260 282 259 282 0.84 5 12 0.013 1.4 10.6 2.4 1 23 293 315 293 315 0.98 6 12 8.1e-05 0.0086 17.5 0.3 1 23 319 342 319 342 0.96 7 12 0.00018 0.019 16.5 0.3 1 23 349 372 349 372 0.97 8 12 0.0034 0.36 12.4 2.3 3 23 381 401 380 401 0.98 9 12 2.7e-06 0.00029 22.2 0.1 1 23 412 435 412 435 0.95 10 12 0.0014 0.15 13.7 4.7 1 23 441 464 441 464 0.95 11 12 6.1e-07 6.6e-05 24.2 0.2 3 23 477 497 476 497 0.98 12 12 0.014 1.5 10.5 3.0 2 23 504 526 503 526 0.92
Sequence Information
- Coding Sequence
- atgacgtCGTTTTTACATTTAAACGTTCAAGattatgttttagtttgtatttgCTGCACGTCCCAGAGTGATGTTTTGTTAAAGTTTAGTTCATGTAAGCACACTGGATTTTTGGCGAATTATATTAAATCGgaaatggACTTGAAAAATACTTACATTTGCAACATTTGCCATAACATGCTGAAAAAGATAGAAGCTTTCAAACAGCAAGTTGAAGAGAGCACAGCTTTGCTTCTGAAACAGATACCAGTCTTAAAGATAAACAAACTTCACAACTTTCAACGCTCGCCAATAGAAATTGACGGCGTTGCAGTGTCGGAAATAGAAGTAGAAGTCAAACTGGAACCGATGGATCCTGAGAGTTCAGATGTTGATAATGTGGCGCCGAAGGTTGATCAGGAATCTACGAACAAGCCTGAACTTGTGAAGGAGTTAaagaatgagaaaaaaacgaaggaGAACAAGAAGGTGATGAAGAATGAGTCTAAGAAGGTGCAAAATGAATCGAAGTACGAAGGAAATATCGGAGTCGTGATACTTACAGACAAAGAGGTCGAAGAAGAAAGAGATCGCATGTCTAAAAACGAAGCGTACTTGAAGCTGCCTTACAAATGTGAAGACTGCATTGTCGGCTTCGAACGCGAGTTGTCTCTGGCCAGCCATATTGAGAAGAGACATAGGAAGATTGAAAATAGTTTCGAATGTAAAATTTGCAAGTCGGTGTCAGGAAATAAATTGTCAGCCAGTCAACACACAAAAACGCACATTAGAAGACTGGAGTGCATGATATGCCGGAAGAGGTACAACCGTATGCAGTCCGCAGTCCAGCACTATGACGAACAGCACGCTCCCGCAGGCGCCGCCATACAACAAGGATATTCTTGCACGGAATGCAGTTTTACTAGCAATTCTAACCGCGCATTTCGCTACCATATGGACAAACACAAGAAGAAACACAATTGTGACATTTGCGGAAATATATTCGCTAACAGTCAAGGACTTAAAGTTCATATGTACACAGTTCACAAACAATGTTCCCGCGTGTACAAATGCGAGCCGTGCAACAAATCGTATCGCTCTCGTACGGGTCTAGAAGCGCATGAACGCTCGGCACACAGCACAACGAACACGCGCGCGTTCTGTGTGGACTGTAACACTCATTACAGCAACATGAAGGGACTGCAGCAACACTTGAACACTCATTCTCGACACGTCGGCGACAGCGATAAGAGATTCATCTGTGACGACTGTGGCGCTAAGTTCGCGACGAAGAGTACGCTACAGGTACATATAAATTGGGAGCACCTCAAGCTTGAGACGCATCGGTGCCCCAAATGCACCAAGGTGTTCAAATGTATTAGTAATCTGAATCGCCACGTGAACTACGTTCACGAAAAGAAAAAACGGCCTCGACCTCGGAACAAAATCTGTGACTACTGTGGAAGAGCCTTTACTaGGCAAGCCGTCCTACAGTCTCACATCAGGACGCACACAGGAGAACATCCGCTGCACTGCACGCACTGCCCTGCCACGTTCGCGCATTCAGCAGCTCTGTATAACCATAACAAACTATTACATACTGCCAAATGA
- Protein Sequence
- MTSFLHLNVQDYVLVCICCTSQSDVLLKFSSCKHTGFLANYIKSEMDLKNTYICNICHNMLKKIEAFKQQVEESTALLLKQIPVLKINKLHNFQRSPIEIDGVAVSEIEVEVKLEPMDPESSDVDNVAPKVDQESTNKPELVKELKNEKKTKENKKVMKNESKKVQNESKYEGNIGVVILTDKEVEEERDRMSKNEAYLKLPYKCEDCIVGFERELSLASHIEKRHRKIENSFECKICKSVSGNKLSASQHTKTHIRRLECMICRKRYNRMQSAVQHYDEQHAPAGAAIQQGYSCTECSFTSNSNRAFRYHMDKHKKKHNCDICGNIFANSQGLKVHMYTVHKQCSRVYKCEPCNKSYRSRTGLEAHERSAHSTTNTRAFCVDCNTHYSNMKGLQQHLNTHSRHVGDSDKRFICDDCGAKFATKSTLQVHINWEHLKLETHRCPKCTKVFKCISNLNRHVNYVHEKKKRPRPRNKICDYCGRAFTRQAVLQSHIRTHTGEHPLHCTHCPATFAHSAALYNHNKLLHTAK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00772288;
- 90% Identity
- iTF_00772288;
- 80% Identity
- -