Hdys033927.1
Basic Information
- Insect
- Hecatera dysodea
- Gene Symbol
- Hivep3
- Assembly
- GCA_905332915.1
- Location
- HG995317.1:4570448-4586290[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8.2 8.8e+02 1.8 0.1 1 9 7 15 7 24 0.76 2 12 0.15 16 7.3 0.4 1 23 146 169 146 169 0.96 3 12 0.0075 0.8 11.3 2.6 1 23 176 198 176 198 0.98 4 12 1.8 2e+02 3.8 0.8 2 22 203 223 202 225 0.83 5 12 0.00024 0.025 16.0 2.3 1 23 236 258 236 258 0.98 6 12 3.9e-05 0.0042 18.5 0.2 2 23 263 285 262 285 0.96 7 12 2e-06 0.00022 22.6 0.6 1 23 292 315 292 315 0.98 8 12 0.0031 0.33 12.6 1.7 3 23 324 344 323 344 0.97 9 12 8.5e-07 9.1e-05 23.7 0.1 1 23 355 378 355 378 0.95 10 12 5.3e-05 0.0057 18.1 3.4 1 23 384 407 384 407 0.93 11 12 7.1e-06 0.00077 20.8 0.4 3 23 418 438 417 438 0.98 12 12 0.016 1.7 10.3 3.0 2 23 445 467 444 467 0.92
Sequence Information
- Coding Sequence
- ATGGACTTGAAAAATACGTACATTTGCAACATATGCCATAACATGTTGAAAAAGATAGAAGCTTTCAAACAGCAAGTTGAAGAAAGCATAGCATTACTTTTGGACCAgGtaccaatattaaaaataaacaaactacaCAACATCCAACGCTCGCCTTTGGAAATTGACGGCGTCACGAAGTTGGAAATCGACATAGAAGTCAAACCAGAACCGACGGAACTAGAATGTTTGGAAGTCAAAACTGACGTTAAGGTCGAGCATGATTCTTCTGACAATGAGACTGAACCTCTTGCTGagttgaaaaagaaaagaaaaaagaagaaaaagaatgagttgagGTACGAAGGTAAGATAGGGATAGTGATATTAACAGAAAAGGAACTACAGGAAGAAAGAGAGCGCATGGCTAAAAGCGAAGGATACTTGAAGCTGCCATACAAATGTGAAGACTGTATTGTCGGCTTCGATCACGAGTTAACTCTGATCAGCCATATTGAGAAGAGACATACGAAGATGAAGAATGGTTTCCAGTGTAATGTTTGCAAGTCAGTATTAAGCACCAAGTTTTCCTACAACGAACATACGAAAAGACACATCAGAAGATTAGAGTGCATGATATGTCGCAAGAGATATAATCACATGCAGTCCGCAGTCCAGCACTACGACGAGCAACACGCTCCGGCCGGCGCCGCCATTCAACAAGGATATACTTGTAAGGAGTGCGGGTTCACTACCACATCAAACCGAGCATACCGTTACCATATGGACAAACACAAGAAGAAACAGAGTTGTAACATTTGTGGGAATATGTTCGTCAACAGTAACGGACTTAAAGTTCATATGTACACAGTCCACAAACAATCCTCCCGTGTGTACAAATGCGAGCGATGCAACAAATCCTACCGCTCGCGCTCCGGTCTAGAAGCGCATGAACGCTCGGCACACGGCACTGCAGATACACGCGCCTTCTGTGTGGACTGTAAGACGCAGTACAGCACCGCGCAGGGCCTACAGCATCACTTGAGCACGCACTCCAGACATGTCAGCGAGAGCGACAAGAGATTCATCTGTGATGAATGTGGCGCCAAGTTCGTGACGAAAAGCAACCTGCAGGTACATATCAACTGGGAACATTTCAAGATAAACACGCATCGATGTACGAAGTGCACGAAGGTGTTCAAGAGTCGTAACGCGCTGAACCGCCACGTCACGTACGTACACAACAAAAAGAGGCCTCCTCGCAACAAGATCTGTGACTATTGTGGACGCGCTTTCACTACGCAAACAATACTCCAGTCCCACATTAGGACGCACACAGGAGAACGCCCGCTGCACTGCACGCACTGCCCCGCCACGTTCGCGCATTCAGCAGCTCTGTATACTCACAACAAACTATTACATACTCCCAAATAA
- Protein Sequence
- MDLKNTYICNICHNMLKKIEAFKQQVEESIALLLDQVPILKINKLHNIQRSPLEIDGVTKLEIDIEVKPEPTELECLEVKTDVKVEHDSSDNETEPLAELKKKRKKKKKNELRYEGKIGIVILTEKELQEERERMAKSEGYLKLPYKCEDCIVGFDHELTLISHIEKRHTKMKNGFQCNVCKSVLSTKFSYNEHTKRHIRRLECMICRKRYNHMQSAVQHYDEQHAPAGAAIQQGYTCKECGFTTTSNRAYRYHMDKHKKKQSCNICGNMFVNSNGLKVHMYTVHKQSSRVYKCERCNKSYRSRSGLEAHERSAHGTADTRAFCVDCKTQYSTAQGLQHHLSTHSRHVSESDKRFICDECGAKFVTKSNLQVHINWEHFKINTHRCTKCTKVFKSRNALNRHVTYVHNKKRPPRNKICDYCGRAFTTQTILQSHIRTHTGERPLHCTHCPATFAHSAALYTHNKLLHTPK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01118631;
- 90% Identity
- iTF_01031370;
- 80% Identity
- -