Hdys013827.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hecatera dysodea
Gene Symbol
-
Assembly
GCA_905332915.1
Location
HG995297.1:4207956-4226050[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0098 1.1 11.0 0.8 1 23 264 286 264 286 0.98
2 16 0.011 1.2 10.8 8.5 1 23 293 316 293 316 0.97
3 16 7.1e-05 0.0076 17.7 1.1 1 23 347 370 347 370 0.98
4 16 0.16 17 7.2 0.1 2 23 379 401 378 401 0.94
5 16 0.034 3.6 9.3 0.1 2 20 412 430 412 432 0.94
6 16 0.00013 0.014 16.9 0.4 3 23 442 462 442 462 0.99
7 16 7.3e-05 0.0078 17.7 4.0 1 23 517 539 517 539 0.98
8 16 0.00073 0.079 14.5 0.1 1 23 545 567 545 567 0.98
9 16 0.00042 0.045 15.3 2.0 1 22 573 594 573 594 0.96
10 16 0.00042 0.045 15.3 2.0 1 22 614 635 614 635 0.96
11 16 0.00042 0.045 15.3 2.0 1 22 655 676 655 676 0.96
12 16 0.00042 0.045 15.3 2.0 1 22 696 717 696 717 0.96
13 16 0.00042 0.045 15.3 2.0 1 22 737 758 737 758 0.96
14 16 0.00042 0.045 15.3 2.0 1 22 778 799 778 799 0.96
15 16 0.00042 0.045 15.3 2.0 1 22 819 840 819 840 0.96
16 16 0.00042 0.045 15.3 2.0 1 22 860 881 860 881 0.96

Sequence Information

Coding Sequence
ATGgatgaattaaaatattgccGAGTATGTCTCGTAACTGACGTAAAAATGTTAAGCTTGGATACTACTACGAGCGATTCCATCGGTGTTGTTTACTCACATTTGGCGCAGATTCCGATATTTGATAAAAATCAACATGTGTGTTTTGAATGTGCCAGTCTGCTCCATAAGTATCAAGAATTCAAATCAAAATGTCTCAGAGCTCACAACattttatctaaaataaaacttggaTCATCACAAATAACAAGATATACACTTAAAAAAGTAGAcaggaaaataaacaaattggaATCAACCCTGACTCTATCTCCAGTAGCCATACTTTATGAAGAACCTACAAATATCACAGaaacagaaattaaaaatattgaagacaAAGAAAACAAGCAATTAGAAATCAATGTTAAAATAGAAGAAATCAGCAAATCTGAAACTGACGATAAATTTGATTATGGTGAATCTTACAATGAGGATTATATTGACTCTACAGAAGAAACAGTTCCAGAGAAGATTCCACAgccaaaacataaaaataaaccaaaaaaagaaccaaaaactaaaaaaagaaaaattaaaactgttttaaaaagTGAAGATAATTTCAGTGATGATGAACCCTTGGCAAAAAGTGCTACAAAGGCCATAAACAAAATGccccttaaaaaaaagaatggtTTGAACATTGGTTATTTTGATGACTATGCAACTGTTGTGTTCCTTACTCCTGAAGACGCTAGGAAAGAGGTGCTGTTGAGGAAAGAGTCCAGTAATTACAAAAAGTCACCATTCAAATGCAACTTATGTTACAGAGGTTTTGAAGCAAAAGCGGCATTTGAAAatcatgaaaagaaacataGCATTgAAAATGGGGACTATGAATGTGATCTCTGCCACCTCAGGTTTCCTCAACAAGTGCACCTGTGTAAGCATAGACTTTCCTGCCATAAGAGAAAGTTCAGCTGTAAATTATGCTCATATGTATGTTATTGCACTTACCAAGCGAAAACTCACGTTAGTCTACACAAAGGAAAGAAATATCCTTGTAAACATTGTGGAGAAATATTCAGCATGCCAAACAGCCTGTTAATGCACAAACGTATGAAGCATTTGAAGGAGTCTGTGCGTGAGAGTGTCTGTGAACTGTGTGGAAGCATCTTTGGCACGCCCAGGGGACTGTTTCTGCATAACATGAAGGTGCATCGGCAGgataaaaACGACAAGCTTGGTCCCGAATGTGAAGACTGCGGAGTGCACTTTACATCGGAACTTGCCTGGAAGCGACATCTCGTGCTTTCTACCAAACATAAAGTGACCAACGGTTGCAAATTCTGCGGAGATACATTCACGAACGAGGACGAACTTAAGGCTCACTTGAGAGTGCACTCGCGGAAGCCAGTCAATAGGTGTAACAATATCAAACTCCCCGCTGCTTGTGCTATTTGCGACAAATGGCTGCTGAACCGCGCGGAGTACAAGACGCACGTGACGTCAGAGCACCCGCTCAGCGACGAGGCGAAGAAGCTCAGCGCAGACGACCACACGCCCTTCGTGTGCGAAGTTTGTGGCCAGATGTTTAAGCAACAATGCTTCCTGACGTACCACCAGCGCAAGCACACGGGCGAGCGGCCGTACGAGTGCGGCGAGTGCCACAAGACGTTCGGGCTGGCGGGCGCGCTGGCCGTGCACCGCAGCGTgcacagccgccgccgccgccacgagTGCCACGTGTGCGCGCGCCTCTTCTCCTTCAAGAGCGCTCTCAATAAACACATGAAGACGTTCGGGCTGGCGGGCGCGCTGGCCGTGCACCGCAGCGTgcacagccgccgccgccgccacgagTGCCACGTGTGCGCGCGCCTCTTCTCCTTCAAGAGCGCTCTCAATAAACACATGAAGACGTTCGGGCTGGCGGGCGCGCTGGCCGTGCACCGCAGCGTgcacagccgccgccgccgccacgagTGCCACGTGTGCGCGCGCCTCTTCTCCTTCAAGAGCGCTCTCAATAAACACATGAAGACGTTCGGGCTGGCGGGCGCGCTGGCCGTGCACCGCAGCGTgcacagccgccgccgccgccacgagTGCCACGTGTGCGCGCGCCTCTTCTCCTTCAAGAGCGCTCTCAATAAACACATGAAGACGTTCGGGCTGGCGGGCGCGCTGGCCGTGCACCGCAGCGTgcacagccgccgccgccgccacgagTGCCACGTGTGCGCGCGCCTCTTCTCCTTCAAGAGCGCTCTCAATAAACACATGAAGACGTTCGGGCTGGCGGGCGCGCTGGCCGTGCACCGCAGCGTgcacagccgccgccgccgccacgagTGCCACGTGTGCGCGCGCCTCTTCTCCTTCAAGAGCGCTCTCAATAAACACATGAAGACGTTCGGGCTGGCGGGCGCGCTGGCCGTGCACCGCAGCGTgcacagccgccgccgccgccacgagTGCCACGTGTGCGCGCGCCTCTTCTCCTTCAAGAGCGCTCTCAATAAACACATGAAGACGTTCGGGCTGGCGGGCGCGCTGGCCGTGCACCGCAGCGTgcacagccgccgccgccgccacgagTGCCACGTGTGCGCGCGCCTCTTCTCCTTCAAGAGCGCTCTCAATAAACACATGAAGACGTTCGGGCTGGCGGGCGCGCTGGCCGTGCACCGCAGCGTgcacagccgccgccgccgccacgagTGCCACGTGTGCGTGAGATGA
Protein Sequence
MDELKYCRVCLVTDVKMLSLDTTTSDSIGVVYSHLAQIPIFDKNQHVCFECASLLHKYQEFKSKCLRAHNILSKIKLGSSQITRYTLKKVDRKINKLESTLTLSPVAILYEEPTNITETEIKNIEDKENKQLEINVKIEEISKSETDDKFDYGESYNEDYIDSTEETVPEKIPQPKHKNKPKKEPKTKKRKIKTVLKSEDNFSDDEPLAKSATKAINKMPLKKKNGLNIGYFDDYATVVFLTPEDARKEVLLRKESSNYKKSPFKCNLCYRGFEAKAAFENHEKKHSIENGDYECDLCHLRFPQQVHLCKHRLSCHKRKFSCKLCSYVCYCTYQAKTHVSLHKGKKYPCKHCGEIFSMPNSLLMHKRMKHLKESVRESVCELCGSIFGTPRGLFLHNMKVHRQDKNDKLGPECEDCGVHFTSELAWKRHLVLSTKHKVTNGCKFCGDTFTNEDELKAHLRVHSRKPVNRCNNIKLPAACAICDKWLLNRAEYKTHVTSEHPLSDEAKKLSADDHTPFVCEVCGQMFKQQCFLTYHQRKHTGERPYECGECHKTFGLAGALAVHRSVHSRRRRHECHVCARLFSFKSALNKHMKTFGLAGALAVHRSVHSRRRRHECHVCARLFSFKSALNKHMKTFGLAGALAVHRSVHSRRRRHECHVCARLFSFKSALNKHMKTFGLAGALAVHRSVHSRRRRHECHVCARLFSFKSALNKHMKTFGLAGALAVHRSVHSRRRRHECHVCARLFSFKSALNKHMKTFGLAGALAVHRSVHSRRRRHECHVCARLFSFKSALNKHMKTFGLAGALAVHRSVHSRRRRHECHVCARLFSFKSALNKHMKTFGLAGALAVHRSVHSRRRRHECHVCARLFSFKSALNKHMKTFGLAGALAVHRSVHSRRRRHECHVCVR*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-