Hdys030920.1
Basic Information
- Insect
- Hecatera dysodea
- Gene Symbol
- -
- Assembly
- GCA_905332915.1
- Location
- HG995312.1:12586619-12621152[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.35 37 6.1 0.2 1 23 392 414 392 414 0.95 2 19 0.00013 0.014 16.9 0.5 1 23 429 451 429 451 0.96 3 19 0.00011 0.012 17.1 6.1 1 23 457 479 457 479 0.96 4 19 1e-05 0.0011 20.3 2.3 1 23 486 508 486 508 0.99 5 19 2.7e-06 0.00029 22.2 0.4 1 23 514 536 514 536 0.93 6 19 1.5e-07 1.6e-05 26.2 0.1 1 23 542 564 542 564 0.98 7 19 6.2e-06 0.00067 21.0 1.9 1 23 570 593 570 593 0.96 8 19 0.00011 0.012 17.0 3.0 1 23 599 622 599 622 0.96 9 19 6.9e-05 0.0074 17.7 0.9 2 23 629 650 628 650 0.97 10 19 0.0088 0.95 11.1 0.1 5 23 657 675 655 675 0.95 11 19 0.0088 0.95 11.1 0.1 5 23 682 700 680 700 0.95 12 19 0.0088 0.95 11.1 0.1 5 23 707 725 705 725 0.95 13 19 0.0088 0.95 11.1 0.1 5 23 732 750 730 750 0.95 14 19 0.0088 0.95 11.1 0.1 5 23 757 775 755 775 0.95 15 19 1.3e-05 0.0014 20.0 1.0 1 23 781 803 781 803 0.97 16 19 0.094 10 7.9 0.0 1 22 809 830 809 830 0.96 17 19 0.094 10 7.9 0.0 1 22 846 867 846 867 0.96 18 19 0.094 10 7.9 0.0 1 22 883 904 883 904 0.96 19 19 0.094 10 7.9 0.0 1 22 908 929 908 929 0.96
Sequence Information
- Coding Sequence
- ATGAAGAAACGTGGGAGACTACTACAACTAAAAAACAGAACTAAAGAACAAAAAGAAGAACTGACACAACTTTTTAAGAAAACAAAGAAAGCTATCAAAGAGGACTATAATACATACAGAGAAGGAATTATCGAAAAAAACCTAACAACATTTAGAAGTTCAAAAAGAGCCAACAAAGAATTATCAACACACAAGACGTGGATTCAAAACCTAAAACAAGGACAGAGGGAAGCAAACAACAGAAAAGATATATTGAACTGCGCTACGGATTTCTACAGAGAACTCTACAGAAGATCACCAGAAGAACCAGTCACAAATGATAGCATCAACaatgaaacaaaagaaacagATGACATAGCTATTTTCAGTGAATCTCCAAAAGAACTAGAAATAATGCTGCAAAACCTCGCATCTGAAAGCAAAAAAGTAGGACTTGATATGAATACCAACAAGACCAAAATAATGACAAACCATACGCAAACCCCGATTAATGTTGAAGGCAAGACGATAGAATATGTAAAAGAATACATATATCTAGGAAAACTAATGTCATTTGATACCAACAGAAATGAAAAAGAAGTAGACAGAAGAATAAACATATCCTGGAAAAAATACTGGGCACAAAAAGAAATTCTCAAAGGAAATCATAGTCTGAGGCTCAAGAAAGTTGTAATGGACTCGTGCATTCTACCATCACTAACCAACATTTCCCCATTTACAGACACAATAGTGGTGGACAGTGAAAACGGCTCGATTCTTCGAATGGTGGCCGGACAGAAGTTTATCTACGAAGGTGGAGAGATATCGCTGGTGATGCCTGACGAGGATGAGCAGCCTGACAACGATGCTGAGCAGGGAGACAACGGGGATAGTCAAGATTCTAATGATGAGTCTCAGATAGAGTTGCAAGTATCAGGTGATGAAGAAACGGCGAACGCTATTATCGCGGCAGCACAAGAACAAGGAGGTGCCTTCATAAAGGTGGAGTCTGGAGAGATGTTCCGAGTGAAGTCAGTGTCCAGCGCCAGTCCACGAGACCCGCTGCTCATCGTGGCGCAGCACGGCGACGCCTTCAAGTGTCTGCTGTGCGAGAAGAACGACGAAACCCCACCGAGTGTAGAAGACGCTGATACAATGATGCGACATTTAAAAACAGTTCACGACGCCAGAATATACCTGTGTCGCTTCTGCGGCGCTGTCATGAGGAGACGCACGGAATATGCGACGCATATAGCGTCGCACGCGGCGGGTAGCGCGGAGAGCGGGCCGGGCGCGCGGCTGGCGCACCGCTGCGCCGAGTGCGGCAAGAGCTACAGCTCGCGCACGCTGCTGGCGGAGCACGCCAACCTGCACTCGGGCGCGCGCCCGCACTGCTGCGCCCACTGCGGGAAGGCCTTCGCCTCCAAGTACACCTACCAGGCGCATCTCAAGACACATGCGGTACGACCGCGACCCTACAAATGCAACCAGTGCGGAAAATCATTCCTCACGCAACAGAATCTGAATCAGCACGAGAAAACGCATTCGGGCGTCAAGGACTTTGTCTGTAATATATGTAACAAAGCGTTCAGCACACAACACAACTTAGAGGTACATGGCGTAGTCCACTCTGGGAACAAAGCTTTCGTATGCAACGTGTGCGGGAAGGCGTTCGCGAGGAGAGCCGAACTGAGGGACCACATTCGGATACACACTGGTGAGCGTCCATTCTCGTGCGACATATGCGGCGCTCGCTTCACGCAGCGCTCGAACTTGCACTCGCATCGCCGAGCTACGCACTTCGACGATAAGCGATACCACTGCGAACAGTGCCCCAAGAGGTTTAAGAGGAgaagATTACTAGAGTACCACATAAAGGCGTCGCACACGGGCGAGCGGCCCCTCAAGTGCGGCATCTGTCAGCTGTCGTTCGTGTACCCCGAGCACTACAAGAAGCACGTGCGCATACACAGCGGGGAGAGGCCGTACGTGTGTGAGCTGTCGTTCGTGTACCCCGAGCACTACAAGAAGCACGTGCGCATACACAGCGGGGAGAGGCCGTACGTGTGTGAGCTGTCGTTCGTGTACCCCGAGCACTACAAGAAGCACGTGCGCATACACAGCGGGGAGAGGCCGTACGTGTGTGAGCTGTCGTTCGTGTACCCCGAGCACTACAAGAAGCACGTGCGCATACACAGCGGGGAGAGGCCGTACGTGTGTGAGCTGTCGTTCGTGTACCCCGAGCACTACAAGAAGCACGTGCGCATACACAGCGGGGAGAGGCCGTACGTGTGTGAGCTGTCGTTCGTGTACCCCGAGCACTACAAGAAGCACGTGCGCATACACAGCGGGGAGAGGCCGTACGTGTGTGAGATCTGCGGAAAATCGTTCAACTCTCGCGACAATCGCAACACACACCGCTTCGTGCATTCGGACAAGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATcacgacacaacacaacacaacacacaagaAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACgtatcacaacacaacacaacacaacacacaagaAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCaAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACgtatcacaacacaacacaacacacaagaAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCtGAAATCGGAAACGGAAGTGAATCTAGCAGACGCCAAATTCTACATCACGGAAGACAAGAAGTTAATATTACAAGATACCGataACATAGGAGAGAGAGCTGAAGGCACTATTCTCGAAGCGGTTGATGTCGATCAACTCGGTGAACAGACTGAGatCGTGGCTAACGACGAAAACGGCGGTATGGTGCGACTCATACAAATCAAGTTACCTGACGGGAACAACGGCTGGGTCGCTATCAACCGCTGA
- Protein Sequence
- MKKRGRLLQLKNRTKEQKEELTQLFKKTKKAIKEDYNTYREGIIEKNLTTFRSSKRANKELSTHKTWIQNLKQGQREANNRKDILNCATDFYRELYRRSPEEPVTNDSINNETKETDDIAIFSESPKELEIMLQNLASESKKVGLDMNTNKTKIMTNHTQTPINVEGKTIEYVKEYIYLGKLMSFDTNRNEKEVDRRINISWKKYWAQKEILKGNHSLRLKKVVMDSCILPSLTNISPFTDTIVVDSENGSILRMVAGQKFIYEGGEISLVMPDEDEQPDNDAEQGDNGDSQDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMFRVKSVSSASPRDPLLIVAQHGDAFKCLLCEKNDETPPSVEDADTMMRHLKTVHDARIYLCRFCGAVMRRRTEYATHIASHAAGSAESGPGARLAHRCAECGKSYSSRTLLAEHANLHSGARPHCCAHCGKAFASKYTYQAHLKTHAVRPRPYKCNQCGKSFLTQQNLNQHEKTHSGVKDFVCNICNKAFSTQHNLEVHGVVHSGNKAFVCNVCGKAFARRAELRDHIRIHTGERPFSCDICGARFTQRSNLHSHRRATHFDDKRYHCEQCPKRFKRRRLLEYHIKASHTGERPLKCGICQLSFVYPEHYKKHVRIHSGERPYVCELSFVYPEHYKKHVRIHSGERPYVCELSFVYPEHYKKHVRIHSGERPYVCELSFVYPEHYKKHVRIHSGERPYVCELSFVYPEHYKKHVRIHSGERPYVCELSFVYPEHYKKHVRIHSGERPYVCEICGKSFNSRDNRNTHRFVHSDKKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTTHKKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTTHKKPYECVACGAGYMRKQLLYAHMNTSKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTQEALRVRRVRRRLHAQTAALRAHEHQLKSETEVNLADAKFYITEDKKLILQDTDNIGERAEGTILEAVDVDQLGEQTEIVANDENGGMVRLIQIKLPDGNNGWVAINR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -