Hgla001439.1
Basic Information
- Insect
- Hebomoia glaucippe
- Gene Symbol
- -
- Assembly
- GCA_025727935.1
- Location
- JAOSYY010000006.1:165167-168046[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.1 78 4.3 2.2 1 23 45 67 45 67 0.94 2 16 0.34 23 5.9 0.0 2 23 96 118 95 118 0.94 3 16 0.047 3.3 8.6 0.1 3 23 140 161 138 161 0.94 4 16 0.035 2.4 9.0 6.2 1 23 166 189 166 189 0.95 5 16 0.0094 0.65 10.8 1.2 1 23 194 217 194 217 0.92 6 16 0.12 8.3 7.3 0.6 2 23 220 242 219 242 0.96 7 16 2.6 1.8e+02 3.1 0.5 2 21 249 268 248 269 0.90 8 16 0.0043 0.3 11.9 0.8 1 23 325 348 325 348 0.93 9 16 2.2 1.5e+02 3.4 0.1 3 23 376 397 374 397 0.88 10 16 0.0025 0.17 12.6 0.3 2 23 420 443 419 443 0.97 11 16 0.00073 0.05 14.3 2.7 3 20 450 467 449 471 0.93 12 16 0.27 19 6.2 0.2 1 23 476 499 476 499 0.95 13 16 0.0031 0.21 12.3 0.1 2 23 505 527 505 527 0.92 14 16 0.00019 0.013 16.2 4.5 1 23 531 554 531 554 0.97 15 16 0.00018 0.013 16.2 0.4 2 23 561 582 560 582 0.96 16 16 0.082 5.7 7.8 2.3 1 23 588 610 588 610 0.97
Sequence Information
- Coding Sequence
- ATGCGGTTTCTTATATTTAACACCAATGTATCGTCTAAATACAGCGGGGTCCCATCTTCGATGCGTATACGACGAAATTTAGTTATCCTATTCAATAAAACATCGATTGTGCCTTTCAAATTTCGCGGAAAGTACCTCTGTTTCTTTTGTAGTAAATACGTCGATGAGTTCTCAAAGTTGCGACAGCACACTAGAGATCACGGCGATTGTACCATACGTACACACTCGTTGAAGTCGATTCGCGGTGTAACAAATGTCGAAATTAAAATCGACGTTTCCGAAGTAAGTTGTAGAGTCTGCGGTGAGATGAGTGCAAACTTGAAAAGCGTCATAGATCATTTGATTGTTAGACACAAAATCGATTACGATAGGGGTATAGAAATGCCGTTTGAGGAATACCGCTTGAAGGACCTAGCCTGTCTCGTGTGCGATGCGAAGTTCACGTTCTTCGGCTATTTAGTGTCTCACGTCAATATTTCCCATCCGAAAAACAACTTCAACTGCGACAGTTGCCATCAGAAGTTCAATAAAAAGCGGGATTTGTTTTCGCACACAAAAAACTATCACAGAGAAGGCGGTTTTGTTTGCGATACGTGCAATCAGACATTCACGTCGCTAAACATTTTGAATAAACATAAAATTAACCGGCACATATCCAGATGTAATATCTGCTTTCTGAAACTACCCTCGGCCGTGTTGAAACGTAAACATATGAAAATGGAACATCCAGATGACGGTAGTCTGATATGTAAACTGTGTTTAAAGCAGTTCCATACGGATATAGGTTTAAAAATGCATTCTAGGAACTGTAGGAGCGTTAATATTAAATTTGATGATAACGACATTGACGTAATGGATTCGGATGTTAAATACGACGCACCGAAAAGGACCAGCGTTAAGCAATTACGAGAGAATATAGCCTCCGTCATCACAATGTCGACGGCAATACCATTTAACTTTTTCCAGAATAAATTTAACTGTTTCTTCTGCTCTAAAGATTTCCAAGATCCCGACTCTCTAAGAGAGCACACGGTCATGAGCCACCCCGTGTGCGATGTTAGGAAAACGATCAGAAAATGTCGCGAATCCGAGTCTTCCGTCAAAATTGACATTTCGACGCTCGCCTGCAAGATATGCTTCGAGTCTATGAGCGAGTTGGATACGTTACTAGACCACTTGATAGCTAAACACGACGCGAACTATGATAGAACGATAAAAACCTGCCTCCAACCGTACCGTTTGATCAAAGATCATATGCAATGCCCTATCTGTCCCAACGAAGTGTTCAGGTTCTTTGGTACATTATTGAAACACATGAATACAAAACATACGGACAATAAAAACATCTGCGTGCACTGCGGCCAGTGCTTTCGAAGGGAACAGAATCTCAGAGTTCATCTTTGGCGACGTCACAGCGATGGCAAGTTCAACTGTGGCTTATGTGGCGTGGACTGCGATATACCATCCAGGCTGTTCATGCACATGGCCAAGGAACATGGCGTGAAGGCCGCCAAGTGTCCCATATGTGCCGAATCGTTCGAGACGCAGTATTTGAGGCAGAAACATTTGATCGATGCCCATAATTCGGGACATAAGTGCACTTACTGCGGTAAGCTGTTCACGCGGGATTCGTTTATGAAAGACCACATAAGGCGCACGCATTTGAAGGAGAAGAACGTGGAGTGTAGTATTTGCAATGCGAGGTTCTTCAATAATATCCTGTTAAGGCGGCATATGGTAAAGCACAGTGGCGTTAAGAATTTCCATTGCGACGTCTGTGGCGATAGATTCTATTGGAAGAAAAGTTTGAGTACACACATGATAAAGCATAAGAAGAATGACGAATTGCCCCATTGA
- Protein Sequence
- MRFLIFNTNVSSKYSGVPSSMRIRRNLVILFNKTSIVPFKFRGKYLCFFCSKYVDEFSKLRQHTRDHGDCTIRTHSLKSIRGVTNVEIKIDVSEVSCRVCGEMSANLKSVIDHLIVRHKIDYDRGIEMPFEEYRLKDLACLVCDAKFTFFGYLVSHVNISHPKNNFNCDSCHQKFNKKRDLFSHTKNYHREGGFVCDTCNQTFTSLNILNKHKINRHISRCNICFLKLPSAVLKRKHMKMEHPDDGSLICKLCLKQFHTDIGLKMHSRNCRSVNIKFDDNDIDVMDSDVKYDAPKRTSVKQLRENIASVITMSTAIPFNFFQNKFNCFFCSKDFQDPDSLREHTVMSHPVCDVRKTIRKCRESESSVKIDISTLACKICFESMSELDTLLDHLIAKHDANYDRTIKTCLQPYRLIKDHMQCPICPNEVFRFFGTLLKHMNTKHTDNKNICVHCGQCFRREQNLRVHLWRRHSDGKFNCGLCGVDCDIPSRLFMHMAKEHGVKAAKCPICAESFETQYLRQKHLIDAHNSGHKCTYCGKLFTRDSFMKDHIRRTHLKEKNVECSICNARFFNNILLRRHMVKHSGVKNFHCDVCGDRFYWKKSLSTHMIKHKKNDELPH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01205947;
- 90% Identity
- -
- 80% Identity
- -