Basic Information

Insect: Hebomoia glaucippe
Gene Symbol: -
Assembly: GCA_025727935.1
Location: JAOSYY010025001.1:1-3742[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0055 0.38 11.5 2.0 3 23 25 45 23 45 0.96

2 15 1.8 1.2e+02 3.6 4.3 1 19 53 71 53 76 0.85

3 15 1.1e-05 0.00078 20.0 2.9 1 23 82 105 82 105 0.96

4 15 2.5e-06 0.00017 22.1 0.5 1 23 107 130 107 130 0.95

5 15 0.044 3 8.7 0.2 1 23 164 186 164 186 0.97

6 15 7.3 5e+02 1.7 0.5 2 19 211 228 210 230 0.91

7 15 0.0011 0.075 13.8 1.3 1 23 240 262 240 262 0.96

8 15 0.014 0.99 10.2 0.1 1 20 268 287 268 289 0.93

9 15 0.063 4.3 8.2 5.6 1 23 301 324 301 324 0.91

10 15 0.027 1.9 9.4 0.8 1 23 329 353 329 353 0.96

11 15 0.28 19 6.2 1.7 3 23 361 381 361 381 0.97

12 15 0.00078 0.054 14.2 0.4 1 20 386 405 386 408 0.94

13 15 0.014 0.94 10.3 1.3 3 23 416 436 414 436 0.96

14 15 5.8e-06 0.0004 20.9 6.5 1 23 442 464 442 464 0.97

15 15 0.0064 0.44 11.3 4.7 3 23 472 493 471 493 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0055	0.38	11.5	2.0	3	23	25	45	23	45	0.96
2	15	1.8	1.2e+02	3.6	4.3	1	19	53	71	53	76	0.85
3	15	1.1e-05	0.00078	20.0	2.9	1	23	82	105	82	105	0.96
4	15	2.5e-06	0.00017	22.1	0.5	1	23	107	130	107	130	0.95
5	15	0.044	3	8.7	0.2	1	23	164	186	164	186	0.97
6	15	7.3	5e+02	1.7	0.5	2	19	211	228	210	230	0.91
7	15	0.0011	0.075	13.8	1.3	1	23	240	262	240	262	0.96
8	15	0.014	0.99	10.2	0.1	1	20	268	287	268	289	0.93
9	15	0.063	4.3	8.2	5.6	1	23	301	324	301	324	0.91
10	15	0.027	1.9	9.4	0.8	1	23	329	353	329	353	0.96
11	15	0.28	19	6.2	1.7	3	23	361	381	361	381	0.97
12	15	0.00078	0.054	14.2	0.4	1	20	386	405	386	408	0.94
13	15	0.014	0.94	10.3	1.3	3	23	416	436	414	436	0.96
14	15	5.8e-06	0.0004	20.9	6.5	1	23	442	464	442	464	0.97
15	15	0.0064	0.44	11.3	4.7	3	23	472	493	471	493	0.95

Sequence Information

Coding Sequence: ATGGCTTCAAAAACAGATTCACAACAATTACTGCTCAAACTGACCACAATAGACTTAGTTGGTGGCATCTTTTGCAATGTTTGCACTATGACATTCAAAAATAAACAAGAATTTGACTCACATTATACAAAGCATACAAGCAGTAAAGATATTGTATACAGTTGTGTGGTCTGCCATAAGGAATTTTCTGGATATCCAAGCTTCCGTGGTCACTGTTACACTAATCATGTGATCAAGAATAGATTTACATGTGAAGAATGCAACAAGTGTTTCTCAAAACTTCAAAATCTGCAGGAGCATGTTAAATTGATGCATTCATTCCAGTGCTCCATCTGCAATAAAAATTTCTCATCAAAAAAAGAGCTCCGTATACATGAAATTGTCATCCACAAAGATAACAGTGATAAACCAATATGCCAAGTCTGTCAAGAAGACCTCCCAACAATGGACATCTGTCAACAACATATTGATATGCATCTTGAATACATTTACTCATGTCCAATTTGTCAAGAAGAAATTACAGATAAAAATAATTCCGTAGAGCATTTAAAAAAACATTTTGGAAATATTGGTTGCGAAGAAGAAATGGAGTTAGACCCAGAAGATATTATTGAGCAGTTGAGTGCAATATCTTGTGGGTTCTGTTCGATGATTTGCACTAATCGAGTAGAATTTGATGCACATTTCTCTTGTGACCATGCAGATGAAGATATTGTGTATACATGCATTGTTTGCGGGAAGCAGTTTGATAAATATTCACTGTTCCGAACACACATCAATAATCATTACACTGACAATAGATTTGAATGCGATAGTTGTAACCAGACATTCCCCCGCCTCTCCCCATTGGTGTTACACGTGTCGCAGTGCGCGGGTGCCGAGCATAAGAAGCACAAACCTTATGTGTGCTTCCACTGCGGCCACCGTTACTTCACTGAGCATTCACTATATAAGCATGTCACCGATGCCCACAATGGCTTCAACTTTAGGTGCAGGGAAACTGGCTGTGAACAAGTGTTTGACAAACGCCGCGACCTACTACTCCATTCGCGTCAACACAACACCAAAGTGCAGAACTGGTGCCGGCAATGCGGACAGGACTTCACCTCTCTTGCGTCGTGCGAGCAACACCTTGACACGCACAAAAAGTACAACTACGCGTGCCCTATATGCAACAGGAACTACGCAGAGAGAAGCTATCTACTTAAACACATTCCGCATCACTTTGAGGCCGTCATACATCTCTGCAAGGTCTGCGGGAGGATCTACGACGCGAAACGACGCCTGCTCGAACATTTGAAGACACATTCGGTAACAAAAGTACATAGTTGCACACATTGCCCGAAAACATTCGCAAAACGTTCGCatttgacgcaacacataaatattcacagtgcagagaaacctaataattgtaatatatgtgagaaaactttctcctgttcggcgaatttgcacaaacacTTGACTAGAGTGCATTGCGTCAGTTCAAACAAGCCCATTGAGAAAGTTCGAAACGTTAAAGAAGTCAAAGCTAAAATCAAAGACGTACAAATCAATACGGAGATGAAAATTTGCGAAAATACAGATAATGCTTCGAAAAAAATTGATTGGAATGTTTACTTCGGCGAAGAGATGGAGTCCGATAGTATTGACCAGACGCTGATTGATAAGGATTTGCAACTGTTTGAACACCCAGAGACTGTTAACTATCAAATTGACCCGACTACTATGCTTG
Protein Sequence: MASKTDSQQLLLKLTTIDLVGGIFCNVCTMTFKNKQEFDSHYTKHTSSKDIVYSCVVCHKEFSGYPSFRGHCYTNHVIKNRFTCEECNKCFSKLQNLQEHVKLMHSFQCSICNKNFSSKKELRIHEIVIHKDNSDKPICQVCQEDLPTMDICQQHIDMHLEYIYSCPICQEEITDKNNSVEHLKKHFGNIGCEEEMELDPEDIIEQLSAISCGFCSMICTNRVEFDAHFSCDHADEDIVYTCIVCGKQFDKYSLFRTHINNHYTDNRFECDSCNQTFPRLSPLVLHVSQCAGAEHKKHKPYVCFHCGHRYFTEHSLYKHVTDAHNGFNFRCRETGCEQVFDKRRDLLLHSRQHNTKVQNWCRQCGQDFTSLASCEQHLDTHKKYNYACPICNRNYAERSYLLKHIPHHFEAVIHLCKVCGRIYDAKRRLLEHLKTHSVTKVHSCTHCPKTFAKRSHLTQHINIHSAEKPNNCNICEKTFSCSANLHKHLTRVHCVSSNKPIEKVRNVKEVKAKIKDVQINTEMKICENTDNASKKIDWNVYFGEEMESDSIDQTLIDKDLQLFEHPETVNYQIDPTTML

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00115226;
90% Identity: -
80% Identity: -