Hgla004992.1
Basic Information
- Insect
- Hebomoia glaucippe
- Gene Symbol
- -
- Assembly
- GCA_025727935.1
- Location
- JAOSYY010000004.1:3747014-3751653[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0019 0.13 13.0 0.1 2 23 200 221 199 221 0.96 2 12 4.9e-05 0.0034 18.0 5.1 1 23 227 250 227 250 0.96 3 12 2.6 1.8e+02 3.2 0.6 1 8 263 270 263 285 0.83 4 12 0.00012 0.0086 16.7 2.9 1 23 502 524 502 524 0.98 5 12 1.9e-05 0.0013 19.3 2.0 2 23 530 552 529 552 0.97 6 12 2e-05 0.0014 19.2 2.6 3 23 561 581 560 581 0.96 7 12 0.0015 0.1 13.3 6.3 2 23 585 606 584 606 0.96 8 12 0.016 1.1 10.1 0.9 3 23 620 641 618 641 0.95 9 12 8.3e-05 0.0057 17.3 2.2 1 23 647 669 647 669 0.98 10 12 0.094 6.5 7.7 4.9 3 23 677 697 676 697 0.97 11 12 0.034 2.4 9.0 5.3 1 23 703 726 703 726 0.96 12 12 0.0064 0.44 11.3 0.8 1 23 730 753 730 753 0.96
Sequence Information
- Coding Sequence
- ATGGAGTCTCATGCCGGCGCAGTCAAAGAAGTAAAAACATACTCACGAATCTCAAAAACCATTAAAAATTATCATTCTGCACCAAAACTACACATTGCTGAAACCTTATCATCAAAAGATGCGGCGAAGTTTTTTTTGGAGGGAACATTGAGACTACGTGTATGCAGATATTGTTTAAATGTAGCAAGTGATTTGAGCGAACTTGATGAAATTCTTGTATTAGCGGGAAAGTGTGGACTTTATGAAGTTACTATTAAAGATATTATTGCCAGTTTTCATGCTGTCAGGGTCACATATGATGTCAATATCCCTAACAAGATATGTAAACCCTGTTTAGATAAAGCATTGCAATGTTACCTCTTCACACAGCAATGTGAACAAGCAGAAAGAGCTATCCTCAATTACTTTGAAGACATAAATGAAAAATTTTATAAACTGGATCCATTAGATCCAATAAAAAAACGAGGTAAACCTAAACTAAATCCTAACCACAATGTCCTGCATACAGAATTTAAAAATGTTATAGATTATGCTGAACCAATTATGAATTTGATAAATCTAAATGCTTTACCAATGGAGACTGAGAGCAATGATTTAGAATGCCCTAAGTGCTGGCAAGTGCTTCCAAATCAAACATCCTTAATCAATCATGAAAAATCACATCCTAAGTCCATGTGGTATCATTGCAAGCAATGCGGTAAATCGTTTATCAAGTATAACCAGTTAAAAAAACACAAACGGCAAGCCCATATTGTCCAGGATCTGGAAAATAAAACAGATATGGTGTTTACATGCAAGCATTGTGGTATTATGAATAATAAATTAACAGAGCATTTAATGCATATTGAGAAACACAAATTTCGCCAAATCTTAAATGATTTAATTATGAAACCTCAAGGAAATTGTGCTATATGTTTTAGTAGAGATAGTAATATGATGAATTTAAATGAGACTATGCACTTTCATGGCGGTATTCCAGGATTGGTGGGTGAAAAACACATTTATAATATTGTTTCATCAGTGTTTCCTGAAATTACCTTACATAATTACCCAGGAAATAAAATTTGTAAACAGTGTGTTAACAAACTAGTAACATCATATATATTCAAATTAAGTATTCAAAATAATAGAAATAGGCTTGATAAATGCATTAGGGTTATGATAGATACCCTCGAAAATGTCGATGACAATAAAAACATATTAATAGAAATTTCACATGATGCAATTCTACCTGCAATTAATGAGAGAGAAAGTTTTGTTAATGATGATCCAAGAGAGGAATTCTTAGAAGACGAGTTCAGGCTATCGGAAACCGAAAGCGATTCTGACAATGAAAGTGATTATAGTTCATTTGAAGATGTTGTCATAGAGAATCCAGCCAAGAATGTCACCAAGACATATGGAAAGAAAGTTTTAGTAAATGGCTATCAACAGTGTGTAAAATCGAAACATTTAGATGAGTTTTTGAAATTTAAAAAGCATAGGAAATATAAAATTTGTAGATACACATGTCCTATGTGTAGCAAACATTTCATATCAGACTACTTTCTTAAAAAGCATATTATACGACATATTACACAACCCACACAGTGCAAAGGTTGTTCTAAAATGTTCAAATCTAGATTCTATTTAACTGAACATTTAAAAACGGGCCACATTTTAAATTCCGAACAGAATAGTTGCAGTGCTTGTGGGCGTTTCTTCAAAACTTCTAAAAACTTAGAAAAACATACAAAAACGCATAACATTAAAGAATGTCAGCTTTGCGACAAGTTTTTCAAATCTCAAAAACATTTTAATACACATTTTCAAAGACACGCTGTCAAATTTAACGTGAATAGATATAACGCGCAAATTTGCAGTTTCTGTGAAAAAGCTTGTTCGAACGAAAATGAACTCTCTTTACATGTGAATAAAGTGCACTTACAAATGAAACCATATAGCTGTGACATGTGTGAAAAACAGTTTTACACAGAGTATAATTTAAATAGTCATAAAAAACTACACAATTTAAAATCCAAAGAGCCATGTTGTTTTTGTCATAAGATTTTAAATAGTAGGAAGACATTAGTTGTTCATTTACGTAAGCATATAAACATTAAACCCCATTATTGTCCGGTTTGTTCAAAATCTTTTTATTCCGAAACTAGTATGAAATGTCATATGAAAATATATCATGGCGGTAGGTATTGTTGTCGGTTGTGTAGGCAAGTAGTGGATAGCAACGGTGATTTAAAAAATCATTTAAAAGTGGCGCACAGTTGTATGTAA
- Protein Sequence
- MESHAGAVKEVKTYSRISKTIKNYHSAPKLHIAETLSSKDAAKFFLEGTLRLRVCRYCLNVASDLSELDEILVLAGKCGLYEVTIKDIIASFHAVRVTYDVNIPNKICKPCLDKALQCYLFTQQCEQAERAILNYFEDINEKFYKLDPLDPIKKRGKPKLNPNHNVLHTEFKNVIDYAEPIMNLINLNALPMETESNDLECPKCWQVLPNQTSLINHEKSHPKSMWYHCKQCGKSFIKYNQLKKHKRQAHIVQDLENKTDMVFTCKHCGIMNNKLTEHLMHIEKHKFRQILNDLIMKPQGNCAICFSRDSNMMNLNETMHFHGGIPGLVGEKHIYNIVSSVFPEITLHNYPGNKICKQCVNKLVTSYIFKLSIQNNRNRLDKCIRVMIDTLENVDDNKNILIEISHDAILPAINERESFVNDDPREEFLEDEFRLSETESDSDNESDYSSFEDVVIENPAKNVTKTYGKKVLVNGYQQCVKSKHLDEFLKFKKHRKYKICRYTCPMCSKHFISDYFLKKHIIRHITQPTQCKGCSKMFKSRFYLTEHLKTGHILNSEQNSCSACGRFFKTSKNLEKHTKTHNIKECQLCDKFFKSQKHFNTHFQRHAVKFNVNRYNAQICSFCEKACSNENELSLHVNKVHLQMKPYSCDMCEKQFYTEYNLNSHKKLHNLKSKEPCCFCHKILNSRKTLVVHLRKHINIKPHYCPVCSKSFYSETSMKCHMKIYHGGRYCCRLCRQVVDSNGDLKNHLKVAHSCM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -