Basic Information

Insect: Hebomoia glaucippe
Gene Symbol: -
Assembly: GCA_025727935.1
Location: JAOSYY010002468.1:883-2909[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0052 0.36 11.6 3.7 1 23 34 56 34 56 0.94

2 10 2.4 1.7e+02 3.2 0.0 3 23 83 104 81 104 0.84

3 10 0.0013 0.09 13.5 0.6 3 23 128 149 127 149 0.94

4 10 0.0026 0.18 12.5 1.6 1 23 155 178 155 178 0.94

5 10 0.0026 0.18 12.6 3.6 1 23 183 205 183 205 0.96

6 10 0.00015 0.011 16.4 0.4 1 23 209 232 209 232 0.92

7 10 0.00012 0.0085 16.7 0.6 2 23 239 261 238 261 0.95

8 10 0.00011 0.0076 16.9 3.5 1 23 267 289 267 289 0.97

9 10 4e-06 0.00028 21.4 3.2 1 23 295 317 295 317 0.99

10 10 2.1e-06 0.00014 22.3 0.4 1 23 323 345 323 346 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0052	0.36	11.6	3.7	1	23	34	56	34	56	0.94
2	10	2.4	1.7e+02	3.2	0.0	3	23	83	104	81	104	0.84
3	10	0.0013	0.09	13.5	0.6	3	23	128	149	127	149	0.94
4	10	0.0026	0.18	12.5	1.6	1	23	155	178	155	178	0.94
5	10	0.0026	0.18	12.6	3.6	1	23	183	205	183	205	0.96
6	10	0.00015	0.011	16.4	0.4	1	23	209	232	209	232	0.92
7	10	0.00012	0.0085	16.7	0.6	2	23	239	261	238	261	0.95
8	10	0.00011	0.0076	16.9	3.5	1	23	267	289	267	289	0.97
9	10	4e-06	0.00028	21.4	3.2	1	23	295	317	295	317	0.99
10	10	2.1e-06	0.00014	22.3	0.4	1	23	323	345	323	346	0.96

Sequence Information

Coding Sequence: CCTGACAGAAATGACTATAGAACGGCTGATATCAGAAATATAGTCAAAATTATAGTCAACTACTCGTCGGCGATACCATTCAAATGGTCGTACAGCAAATTTATGTGTTTCTTCTGCAACAAAGTCTTCGCGAAAATATCTGAGCTCAAATACCACCATTTCGAACATTATGAGACAAATTTAGACAGCGCTCTGAGGTCCATCAATACCGAGACGAAGGTCAAACTGGACATATCGGACCTAGCCTGCAAAGTGTGCCCCAAAGACATGCAAACGCTAGACGATTTTCTGGACCACGCGACGATAATCCACAAACAGACGTACAATAGTGCAGTGAGGTGTTCGATATTCGCGTTCCGCGTAACGGACTCCGACGCCCCGTGTCCCCAGTGCACCCAAACCTTTACGTTCTTCGGGAACCTCCTCTCTCACGTGTATAAGAACCATCTGGACGCGGGCCCATTTTTGTGCGACTCCTGCGGCAAAGGGTTCCTAACAAAGTTCATGTTGAGGAAACATTTCAAAACGGCACACAGCGAGACCGAGTACAGCTGTCAGAAGTGCAACCAGACTTTCAAGACTCACGGCGCGTATTCGTACCACAGGCTAGCGCATAAGGGCGAGTTCACATGCCCGCAGTGCCCGGAGAAATTCCCGAGCTGGTACCTCCGCAAGCGGCACTTAGCGTTCGTCCACGACAAGTCTCTGCAAATCTCTTGCGAGATGTGTTCGAAAAAGTTCGTCAAGTACAAttcgttgaaatggcacctcatgtccgtccatcgcaacgaacggccgttctcttgcgaattgtgcgatttcaagtgtataaatagaagttacttgaagcggcacatggtcagtcactcgaacactaggccttaccagtgccatgtttgtgttaaggcgtttcagaggaaggaacatttggagacgcacgtgagaatacatacgaacgataagcgatacgtgtgtaaggagtgcgggaagggtttcgttcaggtgacggggctcaaagtgcatttgagggctcaccaTTCGAAGCCGGATACGTAG
Protein Sequence: PDRNDYRTADIRNIVKIIVNYSSAIPFKWSYSKFMCFFCNKVFAKISELKYHHFEHYETNLDSALRSINTETKVKLDISDLACKVCPKDMQTLDDFLDHATIIHKQTYNSAVRCSIFAFRVTDSDAPCPQCTQTFTFFGNLLSHVYKNHLDAGPFLCDSCGKGFLTKFMLRKHFKTAHSETEYSCQKCNQTFKTHGAYSYHRLAHKGEFTCPQCPEKFPSWYLRKRHLAFVHDKSLQISCEMCSKKFVKYNSLKWHLMSVHRNERPFSCELCDFKCINRSYLKRHMVSHSNTRPYQCHVCVKAFQRKEHLETHVRIHTNDKRYVCKECGKGFVQVTGLKVHLRAHHSKPDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01204312;
90% Identity: -
80% Identity: -