Hgla016510.1
Basic Information
- Insect
- Hebomoia glaucippe
- Gene Symbol
- Bcl11a
- Assembly
- GCA_025727935.1
- Location
- JAOSYY010000015.1:8404018-8408288[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0027 0.19 12.5 2.2 2 23 71 92 70 92 0.96 2 12 0.11 7.5 7.5 0.7 3 23 100 121 98 121 0.94 3 12 0.087 6 7.8 0.2 2 23 129 151 128 151 0.93 4 12 0.00079 0.055 14.2 3.1 1 23 157 179 157 179 0.96 5 12 8.9e-06 0.00062 20.3 4.8 1 20 185 204 185 207 0.96 6 12 0.00037 0.026 15.2 0.9 1 22 213 234 213 234 0.94 7 12 0.038 2.7 8.9 1.3 3 19 252 268 251 273 0.92 8 12 4.9e-06 0.00034 21.2 1.1 1 23 565 587 565 587 0.97 9 12 6.6e-05 0.0046 17.6 0.7 1 23 594 617 594 617 0.92 10 12 0.021 1.4 9.7 0.9 1 23 625 650 625 650 0.96 11 12 0.0035 0.24 12.2 1.7 1 23 656 680 656 680 0.93 12 12 0.00013 0.009 16.7 2.2 1 21 686 706 686 707 0.95
Sequence Information
- Coding Sequence
- ATGGAGTCTAATTTATCTTTCTATAGTTTACCATTTGTAGATTCTGAACATTCTGAACTAGGTCTATACCGAAGATGTAATGAATTTAACTTTGATATTCACACCCCATTGTCATCGAGTGGTGCATTATTGGGTGGTGACGATGTCCTTGCTCAATTTCTTACTGACGGACCTTTGGAAGAGCCCGACCTTAACGGGCCAACGACTCTCCATTGTGAAATTTGCAAAAAGAAATTTGATAATGCTAAAAAATATTATGGACACTTGCGGGTTCATTCTAAAGATAACCTCTGGATTTGTGATAAATGTCCAAATCAGAAGTTCTCTATTAAACAAAATCTGATGAAGCACAGTCTAACTCATAAGCCATTAGCGAGAGTGTGGAAATGTCCACAATGTTCAATGGTTTTTGAGGCATTATGGCGGCTCCAACAGCATCTGTTTTCAAAACATCTTGATTACAGACCTCATAAATGTGATCAATGCAATAAATCATTCCTGAAGGCTTCAGATTTGAAAAAACATAAAGATATACATGATGGTGTTAATAAATTTTCTTGTACAGAATGTAAAAGAAAATTTAAAGATAAGTCAAACTTGAACAGACATATGGTATGTCATACGAAAGAGAAACAATTTGCTTGCACTGGATGTCAGAATAGATTCACACAGTTAGCAACTTTAAAACGGCACCAAAAGAAATGTGTCCGTTTTGTTGATGTGACTGAAGATAAAACAACTAGAAAAAATTATTGCAGAGAATGTGGCATGTCCTTCCAATACAAAAGTGCATTATTGGAACATTGTGTGAGGCAACACACAGAAAATGGTGGCACAACAGATACTAAACAAAATGTTGATGTAAACAGAACTGTAGAAAATATTGTAGATGATATATTATCTGTGGAAGATGATTACATGACAATGTCCACTAATCACGAGATATTAAACAATTTCAATACTAATCAGACTTTCACGGACATGAACACAGATGATAATTTTATGCAAATAGAGTTTCTGAAAGAAATGAATCAATTACACACTTTAGATGATGAATTGTTATACAACGATTTAGACTTCGACAATTTACAAAATAATCAAATTTTTAATATGAACACTAATGATATGGATTATAACTGTAACGATAATGGTGAAATACTATTTGATTACACATTGGGAAGCAAAAGTATGGATCAGGATATAATGAACGCGTTATATCAAGTTAAAAATGAAAATTTGCCAGATGATTTATTTAATTTAAATACGTTTCCTGATAAATCAGCTACATTACCGGCCACTTTGACCGATGAATGTGCAACTATTTTTGAAAGTGATGTAGATTTAGAAGCAAGTACAAACTTGGCTGCTAATTTAAATCAGTTAATCGGCGAGAACTCTGTACAATACATTTCTACAGAAGATGACGATACATTTATCATAAGTTTGAACAGTGAGATTGATGCAGAAAAACTAACTGATATGCTAAATATTGGCGTTGAATTAGTAAATGATCAACAAGAGAGTCAAATAGAAAATGATGAGTATGTAGCTAAGGCAGATGAAAAAAGTATGAGTCTTTTAAATAACATTGTGCCAATTATTATTAAAGTTGAAGCACCTCAAAAAATTGAGACTGATAAGTTAAATACAAAAGAAATTTCTGAAAAAGATAAAATTAAAAAACCCATTGAGTTTGTCTGCCAAACTTGTAATAAAGTTTTTAATAAAAAAGATAATTATAAATCTCATATTGCAATTCACGAGCCGTCTTTGAGGCGGCACCGGTGTGAGGTGTGCGGAGAGCGGTTTGGGTACCGTTCAACTCTCAACAAGCACCGTGCCGCTGCGCACGAGCCGCGTACGCTGCCCGACCACACGTGCCCGCGGCCGCAATGTACCCGTCACTTCCCAGCAGCTTGGATGTTAAAAAATCATATAGAGCGCGACCATGAGCACGTGACACGTTACCTGTGCGACGCGATCGGCTGCGGCAAGAAGTTCTTCAAGAAGTGCGACCTCGTTGTTCACAAAAGATATCACACAGGCGAGCGTCCTTTTTCTTGCGACATTTGCAAGCAACGATTCCCGCACATTTCACACTTAAAGAGGCATGAGCGGAGCGTCGATTGCACTAAGAGGTAA
- Protein Sequence
- MESNLSFYSLPFVDSEHSELGLYRRCNEFNFDIHTPLSSSGALLGGDDVLAQFLTDGPLEEPDLNGPTTLHCEICKKKFDNAKKYYGHLRVHSKDNLWICDKCPNQKFSIKQNLMKHSLTHKPLARVWKCPQCSMVFEALWRLQQHLFSKHLDYRPHKCDQCNKSFLKASDLKKHKDIHDGVNKFSCTECKRKFKDKSNLNRHMVCHTKEKQFACTGCQNRFTQLATLKRHQKKCVRFVDVTEDKTTRKNYCRECGMSFQYKSALLEHCVRQHTENGGTTDTKQNVDVNRTVENIVDDILSVEDDYMTMSTNHEILNNFNTNQTFTDMNTDDNFMQIEFLKEMNQLHTLDDELLYNDLDFDNLQNNQIFNMNTNDMDYNCNDNGEILFDYTLGSKSMDQDIMNALYQVKNENLPDDLFNLNTFPDKSATLPATLTDECATIFESDVDLEASTNLAANLNQLIGENSVQYISTEDDDTFIISLNSEIDAEKLTDMLNIGVELVNDQQESQIENDEYVAKADEKSMSLLNNIVPIIIKVEAPQKIETDKLNTKEISEKDKIKKPIEFVCQTCNKVFNKKDNYKSHIAIHEPSLRRHRCEVCGERFGYRSTLNKHRAAAHEPRTLPDHTCPRPQCTRHFPAAWMLKNHIERDHEHVTRYLCDAIGCGKKFFKKCDLVVHKRYHTGERPFSCDICKQRFPHISHLKRHERSVDCTKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00115157;
- 90% Identity
- -
- 80% Identity
- -