Hgla019904.1
Basic Information
- Insect
- Hebomoia glaucippe
- Gene Symbol
- ZNF280A
- Assembly
- GCA_025727935.1
- Location
- JAOSYY010024287.1:1-2115[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.1 7.1 7.6 0.5 2 23 138 160 137 160 0.94 2 11 0.0093 0.64 10.8 0.2 2 23 185 207 184 207 0.95 3 11 0.011 0.77 10.6 0.5 2 23 231 252 230 252 0.95 4 11 4.1e-05 0.0028 18.2 2.2 1 23 256 278 256 278 0.98 5 11 0.026 1.8 9.4 2.1 1 13 283 295 283 296 0.93 6 11 7.3 5e+02 1.7 0.2 5 15 299 309 298 311 0.88 7 11 8.1e-05 0.0056 17.3 2.3 3 23 316 337 314 337 0.91 8 11 2.9e-07 2e-05 25.0 1.4 1 23 344 367 344 367 0.98 9 11 0.00066 0.046 14.4 0.3 1 23 373 395 373 395 0.96 10 11 1.4e-06 9.5e-05 22.9 2.8 1 23 401 423 401 423 0.98 11 11 9.5e-05 0.0066 17.1 1.7 1 23 429 452 429 452 0.97
Sequence Information
- Coding Sequence
- GGTAAGCCCTTGGTGGTACTGGCTCACGGGACGCTTCAATTTACGAGTGTGGCGAAGTATGGTGCGCGCTCTGTGACTACAGGGCGACTTTGTGGTTGGGATTTGCCCGTGGTGGTGGTGGGAGGAGCAGACTATTATCACTCGGCCTCAAGTCCGGCACTGACTAACGGATCTGTTTATATAAATGTTCACTGGTCTACAGTGGTTTTTTTTGCTCCAGATATAAGATTCTGGTGGGAGGAACTCGTAATAATTTATAAGTTCCAATGCGACGATTTACCGCTAAAAATACTCCGGACCAAGAAGCCGGACAATAATTTCTCGGACAACGCGAAACACGTGTTCAACGTGAAGAAAATTTTGAAATATTCCAATTGCACGCCGTTCTTCAACAAAACCCTCAGCGGCATCGTCTGCGCCTCCTGCAAAACGACTTGTCCGAACATAATCGAACTCCGCACACACATAAAAGAATCCCATCCAAAGTTACACCTCGGCGAAAAGCGGCTGGACAAGAGTAACTTAGCGTTAaaaatggacataacggacttagagtgcgccatttgcaaaaagaacgtccaaaacataacggcactgaagaaacatttgaattcggaacacaacgagcggttcttccccgacctattcgattacattttcgaattcaaaataacggacggcgaaattttgaactgcgccctctgcaattccaccttcgagactttcaagatgctcttgcagcatatgaacggccactacaggaactacatatgtgaggtctgcgacatgggcttcataaataagcaccgtttgaaaaaccacaagcgtacacacgatgtgggtagtttcaagtgttcgttttgcgataaggtgttcacgacgcgcgtcaggaaaaaatgccacgagaaatacactcacaactcgaacgccaggtacacgacgatatgcccgcactgcgacaaaacgtttaacagctactatcaaaggaatagacacatgttcgacgagcacaacatatcggccgctacctataagtgcaatatatgcgacaaatcgttcattttaaagtccaaactgacgtcacacatcaaaaaggtccacttgatggagaggaatcacatttgtcccgactgcggccagggtttcttcatcaagcagtcgctagacgagcatatgattaggcataatggcgagagggtgttcagctgcacggtatgccataaggcatatgcgaggaagaagacgctgcgggagcatatgcgtatacataacaacgataggcgtttcaaatgcggcctgtgcggcttggcgtttgtccagaaatgcagcatgaaaagccatatgctctccaaccatggCATCTCGTTAAGCGAGTTCGAGAACGTGTCCAAAGCTATCAACACGAAAATCGATCAATAG
- Protein Sequence
- GKPLVVLAHGTLQFTSVAKYGARSVTTGRLCGWDLPVVVVGGADYYHSASSPALTNGSVYINVHWSTVVFFAPDIRFWWEELVIIYKFQCDDLPLKILRTKKPDNNFSDNAKHVFNVKKILKYSNCTPFFNKTLSGIVCASCKTTCPNIIELRTHIKESHPKLHLGEKRLDKSNLALKMDITDLECAICKKNVQNITALKKHLNSEHNERFFPDLFDYIFEFKITDGEILNCALCNSTFETFKMLLQHMNGHYRNYICEVCDMGFINKHRLKNHKRTHDVGSFKCSFCDKVFTTRVRKKCHEKYTHNSNARYTTICPHCDKTFNSYYQRNRHMFDEHNISAATYKCNICDKSFILKSKLTSHIKKVHLMERNHICPDCGQGFFIKQSLDEHMIRHNGERVFSCTVCHKAYARKKTLREHMRIHNNDRRFKCGLCGLAFVQKCSMKSHMLSNHGISLSEFENVSKAINTKIDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -