Hgla008160.3
Basic Information
- Insect
- Hebomoia glaucippe
- Gene Symbol
- -
- Assembly
- GCA_025727935.1
- Location
- JAOSYY010028057.1:355-3776[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.6e-05 0.0018 18.9 0.8 2 21 98 117 97 118 0.94 2 17 3.1 2.1e+02 2.9 0.6 1 20 148 167 148 171 0.83 3 17 6.3e-05 0.0044 17.6 0.2 2 23 177 198 177 198 0.97 4 17 1.3 93 4.0 6.8 1 21 201 221 201 222 0.92 5 17 0.00011 0.0079 16.8 1.7 1 23 234 257 234 257 0.93 6 17 0.00026 0.018 15.7 3.4 1 23 263 285 263 285 0.96 7 17 0.2 14 6.6 0.5 1 23 319 342 319 342 0.85 8 17 0.15 10 7.1 0.2 3 22 352 371 351 371 0.96 9 17 0.0011 0.078 13.7 2.2 2 21 477 496 476 497 0.93 10 17 8.2 5.7e+02 1.6 2.2 3 23 532 553 531 553 0.97 11 17 0.00012 0.0085 16.7 0.7 2 23 559 580 558 580 0.97 12 17 0.33 22 6.0 1.8 3 20 585 602 584 604 0.92 13 17 3.9e-05 0.0027 18.3 0.1 1 23 630 653 630 653 0.94 14 17 0.0013 0.088 13.5 0.4 1 23 659 681 659 681 0.92 15 17 0.013 0.87 10.4 0.3 1 23 687 709 687 709 0.98 16 17 0.0034 0.24 12.2 0.9 1 23 715 738 715 738 0.94 17 17 0.00028 0.019 15.6 2.2 2 23 745 767 744 767 0.96
Sequence Information
- Coding Sequence
- ATGGAGGAAGACTTGAGATTGCCTCGTGGACTGTGCTCCAATTGCTCGAATGACGCAGCTCACTATTGGAACTTTAGGAAAATCTGCCTCGACTCCTCGGACAAATGGAACAAAGCTGCCGACTTTCACCTCGAGAACCACAAAGACACGAACACTTGCACGATATTCTTATGCCTAGACTCAAACACGATAGTCAAAGATGACGGTGTTATAAACGATCCAGTTGTAGCAGTGGCTAGGATGAATTTTATAAACGGACGTCCTCATTTCCGAGCACCTAAAAAGCCTGTACGCTGCACGTCCTGCGGACAGAAATTTACGACAACCTCACAACTCAATAGACACATAAAGAGCACGATGAAACAAATTTGTATTATATGTAATTTGACTGTGGCAAGGCAGAAATTGCCGAGACACATGAAAAGTCACAAATCGATTGTCCACCACTGCGACGTTTGCTATGAAATTTTCGATAAACCCGACGATATCGGGACGCATAAAGCCGATTTGCATTCCGATAGAAATAACGAATGCCAGGTCTGTGGCATGGGTTTCAAATCGCTGCGATCTCTCAACGCGCACATGTACTCCCATACATTATTCCATTGTACGAATTGCAAGAGGACCTTCGAGAATCTCAGATGTTATCGCTACCATAGGAGTCGGTGCGCGAATGGACGTAACTCCCAGCAGAATTTCTACCAATGCGATCATTGCGGGATGAAATATACTAAAAAGCCGTCTCTCCGTATACATATCGTACAGAAACATTTGAATATCCTGCCGTTTGCTTGTCAGCGCTGCGGGAAACGCTGTTCGACGAAGGCTCATCTCGTGGCTCATGAGACTACACACGACGACAAAAGGCAGGTCTATCAGTGCTTTTGTGGGGCGAAAATGCGTACAGAAGTCGGGTATGCCCTTCATCAGAGGATCCACTCTGGTGAGACTCCGTATAAGTGTTCGGAGTGTGACGCGAGTTTCCTGTCGGCATCCAGGAGGGTGGATCACGTTAAAAGAAGGCACACAAACGTCAAGGATATGCCGCACGGCTGCGATCAGTGTAGTGCGAGGTTTTTGAGGCCGTTCGAGCTGAAGAGACATGTGCGGATGCTGGACGAAGAACTGTGTCCTAACGGAGTGTGCATTGCTTGCATAAATCTAGCAATATCGGCGTACGAATTCAGATTATTGGTGAAAAACTCGCAAAACCTATGGAAAAACTGTTTCAACTCGATAAACGTTATAGAAACAGATAAGAGTATGAAGTCTTTGTACTTAATTTTTAACGACAACCTATCCTTGCAGAGCGTAAAGACATTTAACGGCGAGATGAAGAAATACGTTAAACATTTTATCAATCAACCGAAAACTTATTACGGGAGGGTAGGTAAAAAACAGAGGGTATCCCGAACTGGGCCTAGTTGCTCCTGCAGTGACTGCGGGAAGGAATTCCATAGCCCATACTATCTTAGCCTGCATCTCAAGAATAGCAGTCAGCGGGAAGCTTGCTGGCTCTGCGCCGCCATGTGTGGCCGAGGCGAGGAAATGAAATCGCATTTAGCCAGTGTACATAAAATAAACATGGTCTTGTGTAAAAAGTGTCCGGCGCTGCTGAAAAACAAAACGGACGCAGACAAGCACGTGAGGAAATGCCACACGGGGAGCCTTTGGACCTGCGGCGACTGCGGCAATTCGTTCAACAGGCACGCGTCGCTAGAGCTGCACACGCAAATGCACATCGTCAGAATGTGCAGAAACTGCGGGGCGCAGTTCTCGAATCGTGGCTGTTACCGCTATCACCGTTCGCAATGCGAGCCGGACGCGAAGCCGGACTTGAGATCTGTGCCGCGGAACAAACGTTCCAACATACGCGATCCGGCCATGTTCATATGCGATTATTGCCAAAAGACGTACCCGTCTCGTCCGCAATTGCAAAATCATATTATCTGGATCCATATGGACCGGCGACCACATCAGTGCCAGTGGTGCGGGAAAAGGTTCTACACCGCCGCGCGTTTGGCGGAACACAGTGTTGTGCATACCCGGGAGCGGAAGTTCAGCTGTGACATTTGCGGCATGAAGTTAGTTTCCAAGATGGCGGTCGTGTACCATAGACGACGCCATACGGGGGAGAAGCCGTACGAGTGTCAGGACTGCGGTGAAAAGTTTATATCATCGTCTCGTAGGTCCGATCACGCCAAACGCAAACACGATAGGGGGCTGAAACTAGTGTGCGGCTTCTGTAAATCGACGTTTGTAAGGAGCCATGAGTTAAAAAAGCACATTAAGAGAGTACACTGGCTAGATGAGAATTTGAAAAAGGAAAACGAATTTGAAACGGTTAAATTATAG
- Protein Sequence
- MEEDLRLPRGLCSNCSNDAAHYWNFRKICLDSSDKWNKAADFHLENHKDTNTCTIFLCLDSNTIVKDDGVINDPVVAVARMNFINGRPHFRAPKKPVRCTSCGQKFTTTSQLNRHIKSTMKQICIICNLTVARQKLPRHMKSHKSIVHHCDVCYEIFDKPDDIGTHKADLHSDRNNECQVCGMGFKSLRSLNAHMYSHTLFHCTNCKRTFENLRCYRYHRSRCANGRNSQQNFYQCDHCGMKYTKKPSLRIHIVQKHLNILPFACQRCGKRCSTKAHLVAHETTHDDKRQVYQCFCGAKMRTEVGYALHQRIHSGETPYKCSECDASFLSASRRVDHVKRRHTNVKDMPHGCDQCSARFLRPFELKRHVRMLDEELCPNGVCIACINLAISAYEFRLLVKNSQNLWKNCFNSINVIETDKSMKSLYLIFNDNLSLQSVKTFNGEMKKYVKHFINQPKTYYGRVGKKQRVSRTGPSCSCSDCGKEFHSPYYLSLHLKNSSQREACWLCAAMCGRGEEMKSHLASVHKINMVLCKKCPALLKNKTDADKHVRKCHTGSLWTCGDCGNSFNRHASLELHTQMHIVRMCRNCGAQFSNRGCYRYHRSQCEPDAKPDLRSVPRNKRSNIRDPAMFICDYCQKTYPSRPQLQNHIIWIHMDRRPHQCQWCGKRFYTAARLAEHSVVHTRERKFSCDICGMKLVSKMAVVYHRRRHTGEKPYECQDCGEKFISSSRRSDHAKRKHDRGLKLVCGFCKSTFVRSHELKKHIKRVHWLDENLKKENEFETVKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -