Hgla005009.1
Basic Information
- Insect
- Hebomoia glaucippe
- Gene Symbol
- -
- Assembly
- GCA_025727935.1
- Location
- JAOSYY010000004.1:4043517-4046228[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 5.6e-05 0.0038 17.8 2.6 1 23 151 174 151 174 0.98 2 19 8.1e-06 0.00056 20.5 1.0 1 23 183 206 183 206 0.97 3 19 0.012 0.83 10.5 0.4 2 23 219 241 219 241 0.97 4 19 0.00074 0.051 14.3 2.1 1 23 250 273 250 273 0.97 5 19 0.0053 0.36 11.6 4.8 1 23 284 307 284 307 0.96 6 19 1.3e-05 0.00091 19.8 1.8 3 23 339 360 337 360 0.96 7 19 0.00032 0.022 15.4 1.3 2 23 370 392 369 392 0.96 8 19 0.04 2.8 8.8 1.0 3 19 398 414 397 417 0.93 9 19 0.0007 0.048 14.4 0.2 2 21 422 441 422 444 0.94 10 19 0.12 8.2 7.4 3.2 3 23 454 475 453 475 0.95 11 19 0.0002 0.014 16.0 2.3 1 23 480 503 480 503 0.97 12 19 0.17 12 6.9 0.8 2 19 514 531 513 536 0.92 13 19 2.2e-05 0.0015 19.1 0.4 1 23 560 583 560 583 0.94 14 19 7.3 5.1e+02 1.7 0.4 2 13 590 601 589 610 0.75 15 19 0.00067 0.046 14.4 0.7 2 23 616 637 615 637 0.97 16 19 9.7 6.7e+02 1.3 2.9 3 23 645 667 643 667 0.91 17 19 7.6 5.3e+02 1.7 0.5 2 23 675 696 674 696 0.90 18 19 0.098 6.8 7.6 0.1 1 23 703 725 703 725 0.96 19 19 0.16 11 6.9 2.0 1 23 731 754 731 754 0.96
Sequence Information
- Coding Sequence
- ATGTCTAAAATTGAAGAAAGTACTATAGAAATAAAAGTTGAACAAATAGATCATAGAAAAGATCCAACTTCATTCTTGCCAGAAGAACCGATGACTTATGAAATAAAGTCTAAGAAGAAAAAGAAAAAGAAGAAACAAGAAGACCCCTTTAAAGGCATAGAGGAGAAAGTGAAGCTGCCAACAGTAACAGTGTTTGATACAGTACCTGATTCTGTTTTAGACCCAGAAGTTAATATTAAAGTTGAAAATATTGAGGTTGAGTTAGACTTCAATGATTTTGCAAATGATAATGGTTTAATGGTTCAAGGGCCGCAGAGTGACGACGGCCAACCAGAACCAATTGTTAAGCTAGGACATAAGAACAAAGAAGCTGTTTTGTTGACATTTGAAAGTATAATCCATAAACACCAGCCTGTTGAAATCAATGGTCAGACTGATGTTGCACCCAATTTCGTTTGCAAAGTGTGCCATCTAGTCTTTCAATCACCGAAAACTTTACGAATTCATCAAAGGAGAAAACATAAGATATTCCGAAGGTCTTTCAAACATGTTTGTGATTATTGTGGCATGTCATATGAAACCAAAAATAGTCTAGTTGCACATATTAGACGAAAGCATGGACCAGATTCTACCCCTGATGATATGGAAGAAAGAACTTGTGATATTTGCGCATTGGTATTTAAAGGCATGGCCCGGTTGCGCATGCATATGCGTAGAAAACATGGTGCATTCCAAGACTCCTTCAAACATGTCTGTAAAGAATGTGGACTTACGTATGAGAAGTATAGAAGTTTGATAGTACATACGCGAAGGAAGCATTCTGGTGTGATACAAGTTGATGACCAGTATTTTCATTGTCCTTTTTGCCCTAAAGTTTATACCAAACGAGAAACATATGCAAGACATGTACATAGAAAACATAGAATAAATGAAGATGATCCAGATAATACGGTTAAGAAACAAAATGTTAACACCATTGATGACATCAACAATCCAGAAACTGGTGAAGTATGTTGTACAGAGTGTCCCTTGGTATTTTCGTCGTTAAGTTATCTTAAACTGCATATGAGGAGAAAACATAATGCAATGAGAGAAGATTTCCGTTTAAAATGTAAAATTTGCAATTTATCGTACGATAAAATTGAAAGTCTTAAACGACATGTTCGTAGAAAGCATGATAAAGGATCATTCTGTGAAGTTTGCAATAAACAATTTGACACCCGAGAAGATTATTTGAACCATTCTCACTCGAAAATTATTAGAGAATGCCCAGTTTGCGGGTTAATATTTGCATCTCAAAGTGGCCTTGGTAAACATTTACGATGCGCTCATGAAATTATTCAACCCAAATCTGTATTTTGTCATATATGCAATGCTGGATTTCACACTAAGCGTCAATTAAAACCTCATTTGCTAAGAGTGCATTTAAAAGTATCATATACATGTCGGTTCTGTAAAAAAGTTTTCAAAGCGAAAGAAAGCTACAGACGTCATATAATCATTAAACATGGAAACAACCAACCAAAAAGTCAATTACAAACTTGTGAATATTGTTCTGGAACATTTCCAGATGAATTCGAACTGAGTCGGCATTGTGATGTAGCTCACAAATTTGAAGGAATACAAGATCCTAATGAGGTTATAATAAAGAAGGAAGATATAGAAATACCAACATCATACCAGTGCACAAAATGTCCAGAAAGCTATCCAAATTGGGATCAATTAAAGATGCATTATGAGCAAAATCATTATGTTGCAAAAGAAACTCAATGTCAAGTTTGTGGTGAAATGGTGGCCGATAATGAACTACCAAAACATATAAAATCCCATACAAATTCCAGAATAAGTTGTAAGTACTGTGATTTTGCATCAAGTAACAGAGCTAGTATGACTCAGCACATGTTAAGACATAAAAATGCAACAACTCTACATTGTAGTTTTGAAAACTGTAAATATAATACATTTTATGAAGATGCTATGGAGAAGCATAAAAGAAAGCACTTAGATCAAGGTGTAAAATTACAGTGTAGTCAGTGTCCTTTCCAAACAATGAATAAATATATTTTAAAATATCATGAGGAAGTTCATATTACAGGCAAGAAGAGGTATTCATGTGACCAATGTGATTACGCAACTATACTCCCAGCAGGGTTAGTACAACATAAGTATAAACATTCCACTGAGAAAAGATTTAAGTGTGAGGTGTGCCCATTTGCTACAAAGTACAATACATCACTTCGTTTCCATGTTAAAAAGAAACACTGTGATCTCCCAACTTGA
- Protein Sequence
- MSKIEESTIEIKVEQIDHRKDPTSFLPEEPMTYEIKSKKKKKKKKQEDPFKGIEEKVKLPTVTVFDTVPDSVLDPEVNIKVENIEVELDFNDFANDNGLMVQGPQSDDGQPEPIVKLGHKNKEAVLLTFESIIHKHQPVEINGQTDVAPNFVCKVCHLVFQSPKTLRIHQRRKHKIFRRSFKHVCDYCGMSYETKNSLVAHIRRKHGPDSTPDDMEERTCDICALVFKGMARLRMHMRRKHGAFQDSFKHVCKECGLTYEKYRSLIVHTRRKHSGVIQVDDQYFHCPFCPKVYTKRETYARHVHRKHRINEDDPDNTVKKQNVNTIDDINNPETGEVCCTECPLVFSSLSYLKLHMRRKHNAMREDFRLKCKICNLSYDKIESLKRHVRRKHDKGSFCEVCNKQFDTREDYLNHSHSKIIRECPVCGLIFASQSGLGKHLRCAHEIIQPKSVFCHICNAGFHTKRQLKPHLLRVHLKVSYTCRFCKKVFKAKESYRRHIIIKHGNNQPKSQLQTCEYCSGTFPDEFELSRHCDVAHKFEGIQDPNEVIIKKEDIEIPTSYQCTKCPESYPNWDQLKMHYEQNHYVAKETQCQVCGEMVADNELPKHIKSHTNSRISCKYCDFASSNRASMTQHMLRHKNATTLHCSFENCKYNTFYEDAMEKHKRKHLDQGVKLQCSQCPFQTMNKYILKYHEEVHITGKKRYSCDQCDYATILPAGLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00115145;
- 90% Identity
- -
- 80% Identity
- -