Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 3 6.5e+03 -2.8 0.0 15 24 7 16 5 17 0.78

2 5 8.9e-11 1.9e-07 30.9 0.0 4 39 68 104 65 108 0.90

3 5 3.6e-13 7.6e-10 38.6 0.1 1 39 119 157 119 160 0.94

4 5 2.6e-16 5.6e-13 48.6 0.0 2 45 175 219 174 219 0.96

5 5 3e-19 6.4e-16 58.0 0.0 1 45 226 271 226 271 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	3	6.5e+03	-2.8	0.0	15	24	7	16	5	17	0.78
2	5	8.9e-11	1.9e-07	30.9	0.0	4	39	68	104	65	108	0.90
3	5	3.6e-13	7.6e-10	38.6	0.1	1	39	119	157	119	160	0.94
4	5	2.6e-16	5.6e-13	48.6	0.0	2	45	175	219	174	219	0.96
5	5	3e-19	6.4e-16	58.0	0.0	1	45	226	271	226	271	0.96

Coding Sequence: GGATCGGAACTATTAGAAAAACATCTCTCTATATCGAGTGCTGCAGACGTACTGGATTCTTCTGACTTTGCACCCCTTCTTAATATTAAAGACGAACCCCTCTCCGAAGGAGAAGGCGCTCAGATGAGTGGTGATGATGCGAGCGAAAGCAGTACGCCAGAACCGAGCGGTCGAGGTGCTCCGAAAGCCTGGTCTCAAAAAGACATGGAGAAGGCGTTAGACGCTCTCAAGAATCATCACATGAGCCTTACTAAGGCGTCAGCGACGTACGGTATCCCGTCCACTACTTTGTGGCAGAGAGCTCACCGCCTGGGCATCGATACACCCAAGAAGGAAGGCGCGTCGAAGTCTTGGAGTGAAGAGGATCTCAAAGGCGCCCTGCATGCCTTACGGACAGGGGCCATCTCAGCTAACAAAGCCAGTAAGGCGTATGGTATTCCGAGCAGTACATTATACAAGATAGCTCGCCGCGAGGGCATCCGTTTGGCGGCCCCGTTCAACGCCGCTCCGACAGCGTGGCGCCGCGCGGACCTGGAGCGAGCCTTAGCAGCCATCCGTTGCGGCGCCGCCTCAGTACAGCGGGCTGCTTCACACTTCGGAATTCCCACTGGTACACTGTACGGACGATGCAAACGGGAAGGCATTGAGTTGTCTCGGTCTAATCCGACGCCCTGGTCCGAAGACGCGATGGGCGAGGCGCTAGAAGCTGTAAGAGTCGGTCAGATGTCAATTAACCAAGCAGCGATTCACTTCAATCTCCCGTACTCCTCTCTGTACGGGCGTTTCAAGCGATGCAAGTACCAAGTCTCACAGGAGCACCCACAGTTTCAATCACAAGAAAACCGTCCAGAAGATTACAACTCTCAAGATCAGATTCAAGCTCAAGAGTGCCATTATCCGGGCCTTCAAAACTATGAGTCGGATTCTTATTATTTAAGTGAAGTGTCGTCTATGCAAAGCGTGCAGCAACACTACAGCCAAGCGATGTACTACGCTCAATGCAATGTTACCAGCTGA
Protein Sequence: GSELLEKHLSISSAADVLDSSDFAPLLNIKDEPLSEGEGAQMSGDDASESSTPEPSGRGAPKAWSQKDMEKALDALKNHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEEDLKGALHALRTGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALAAIRCGAASVQRAASHFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQVSQEHPQFQSQENRPEDYNSQDQIQAQECHYPGLQNYESDSYYLSEVSSMQSVQQHYSQAMYYAQCNVTS

Sequence clustering based on sequence similarity using MMseqs2