Hnig002758.1
Basic Information
- Insect
- Hartigia nigra
- Gene Symbol
- Prdm15
- Assembly
- GCA_031001745.1
- Location
- JARPRG010000211.1:13317-17273[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.1 71 4.2 0.4 2 23 241 262 240 262 0.94 2 11 0.00019 0.013 16.0 2.3 2 23 270 292 269 292 0.94 3 11 1.4e-05 0.0009 19.6 0.7 2 23 454 475 453 475 0.97 4 11 0.012 0.78 10.3 0.5 1 20 479 498 479 500 0.94 5 11 7.6e-06 0.00051 20.4 1.6 1 23 508 530 508 530 0.98 6 11 0.0057 0.38 11.3 4.1 3 20 536 553 535 555 0.93 7 11 4.4e-05 0.0029 18.0 5.4 1 23 559 581 559 581 0.96 8 11 2.9e-05 0.002 18.5 0.3 3 23 602 622 600 622 0.97 9 11 0.025 1.7 9.3 3.0 1 23 627 649 627 649 0.96 10 11 0.00011 0.0073 16.7 0.1 2 23 655 676 654 676 0.96 11 11 9.9 6.6e+02 1.1 2.2 1 8 681 688 681 688 0.95
Sequence Information
- Coding Sequence
- ATGTCGGACGGAGATTTGCTCACGGCTGAGCCGAAAAATAGCGAGCTCGAACTTTACTTGTCAGCTTGCAATATTTGTGGCCAGAGTCATGATACACATGACTGTCCCTTTTTACTTGATTTGCATTATGTTACTGACACACCAGTACTGTCCCGTGCAAGACAAACACTTCCCAAGGATTTGGAAATTATTCGAATGGCAGATGGTTCGACCACAATAACCACAAAAGTTGATCTTCCAAGAGGCACAACCTTCGGTCCGCTTTGTGCTAAAAGAATTTGGACAATGAATCCGTTAACCAATTTTCCAATCAGAGTATTTGGAAATACGGCTGCAGAAACGTATCATTTGGATTGTTCTAATGAGAACAACTCTAATTGGATGCGTTTTATTGTTCCTGCATCTAATGCAAAGGAACAAAACCTTATTTGTTATCAGgtgaagcaagatatattttatactgcaATGCGTATGATTATGAGTGGTGAAGAATTGCGGGTTTGGTATGCACCATATTATgcactgaaaatgaaaatgccaTTGCATAATACGGATTTTGCAAATATCAGTGCTACTTTACCAGATTCAGATATGCAGCAAATCGTCAAAGCTGAAACTGATGGAGACCAGATTGGATTActaaatAAAGATGTTGCACAAGAATTAGCAGAGAAGTTGCCAGCTCAACATTTGGGTGCTCGAGATGATAAAGCAACATGGAACTGTAGAATATGTTCAACCGTTATTTGTTCAGTTGTTTCGTACGCCAAACATTTAATGGAACATTATAAACCATTACTAGGAGTTTATTGTAATATGtgcaataagaaatttaataatgtttcAGCTTTAGAGCGACATAAACACGTAAAGCATCCAGAGGAAATATCGAACGACGGAGTCATCGGAATTCCAACTTCTGAAagtcaacaacaacaaaatgcTCAGacaatatttcttaatatgaACGATTCCGACGGTCAAACATCAGATGCCATGAGAGATATTTTAGAAAAGTTTAAAGCTGGAAAGGCTATAACGGAAAACAGTCTGCTTTTGTCATCATTACCAAATGATAAAGAGCATCATACTGATCTTCCACTTTTGGATACGAATTCTATAATTGTTAACGATTTACTGCAAAATAATGGATCTCTCATTGAACATTCTTCTCTGAAatcaattttggaaaatcagtGTCTTAATATGAATCTCGGATTGAATAGTATTGCAGATTCAATGTTATCAGAAAATATATCTGCTGTTGATTCTGTTAAATTTAATGTTGAAGAATTAGCATCGGAACTATTGGATATTGTTCCAGAtgttgataatattaataaaaggatAGATAATTTGGAATGTGATATATGCGACAAAAAGTTTGAGAAAGTGGATTACCTTTATCGTCATTTAAGAAAACATACCGGTGAATTCATTTGTCCTTCCTGTTTGGCTGTTTTCGCACGAAAGGAAAATCTGCTTTCGCATACatgtttttccaaaaaattggATTATCATTACGAATGTCCGTATTGTCAAAAACCATTTATgctaaaaaagtatttaaagaGACATATGGTAAAACATACAGaatggAATAATTGTAAATGGTGTCATCATGCGTTTACTTCGCAATCGGAATTACAAGAACATAAATGCCTAGCACCAAAACATGTATGCCTACAATGTGGAAAACGTTTCGTGCACAGAGCTCATTTAAACCGTCATGTGAAGCTTCATAATGATCCAAAGCCGGTCACTAAACGAATCAGAAAGAAGCAGCCAGACAAACCAGTCATTTGTGAAAAGTGCggggatatttttaaaaatccttaCAGTCTAAAACAACATTTACGTTCTCATGgagAAAGAATGTTTGAATGTGACGTATGTCACAGACGCTTTCATCGTGTAGGAGTATTAAAAGAACATAAAACTATACATCAAAGTGCACAAATTCCGTGCAATATTTGcggaaaaaaattgaaaagtaaaaaggcCCTAGACATTCACATGCTACTTCACGGAAACAAGAAATATCAGTGTGACAAGTGTGATAAG
- Protein Sequence
- MSDGDLLTAEPKNSELELYLSACNICGQSHDTHDCPFLLDLHYVTDTPVLSRARQTLPKDLEIIRMADGSTTITTKVDLPRGTTFGPLCAKRIWTMNPLTNFPIRVFGNTAAETYHLDCSNENNSNWMRFIVPASNAKEQNLICYQVKQDIFYTAMRMIMSGEELRVWYAPYYALKMKMPLHNTDFANISATLPDSDMQQIVKAETDGDQIGLLNKDVAQELAEKLPAQHLGARDDKATWNCRICSTVICSVVSYAKHLMEHYKPLLGVYCNMCNKKFNNVSALERHKHVKHPEEISNDGVIGIPTSESQQQQNAQTIFLNMNDSDGQTSDAMRDILEKFKAGKAITENSLLLSSLPNDKEHHTDLPLLDTNSIIVNDLLQNNGSLIEHSSLKSILENQCLNMNLGLNSIADSMLSENISAVDSVKFNVEELASELLDIVPDVDNINKRIDNLECDICDKKFEKVDYLYRHLRKHTGEFICPSCLAVFARKENLLSHTCFSKKLDYHYECPYCQKPFMLKKYLKRHMVKHTEWNNCKWCHHAFTSQSELQEHKCLAPKHVCLQCGKRFVHRAHLNRHVKLHNDPKPVTKRIRKKQPDKPVICEKCGDIFKNPYSLKQHLRSHGERMFECDVCHRRFHRVGVLKEHKTIHQSAQIPCNICGKKLKSKKALDIHMLLHGNKKYQCDKCDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01474190;
- 90% Identity
- iTF_01474955;
- 80% Identity
- iTF_01199651;