Basic Information

Insect: Hartigia nigra
Gene Symbol: -
Assembly: GCA_031001745.1
Location: JARPRG010000495.1:406991-409435[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 7.8e-06 0.00052 20.3 2.4 2 23 448 470 447 470 0.94

2 7 5.7e-06 0.00038 20.8 0.3 1 23 481 503 481 503 0.98

3 7 2e-05 0.0014 19.0 2.3 1 23 509 531 509 531 0.97

4 7 0.14 9.1 7.0 0.2 3 23 540 560 538 560 0.92

5 7 0.00024 0.016 15.6 6.4 1 23 568 590 568 590 0.97

6 7 2e-07 1.4e-05 25.3 0.3 1 23 596 618 596 618 0.97

7 7 4.2e-05 0.0028 18.0 0.4 2 23 629 651 628 651 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	7.8e-06	0.00052	20.3	2.4	2	23	448	470	447	470	0.94
2	7	5.7e-06	0.00038	20.8	0.3	1	23	481	503	481	503	0.98
3	7	2e-05	0.0014	19.0	2.3	1	23	509	531	509	531	0.97
4	7	0.14	9.1	7.0	0.2	3	23	540	560	538	560	0.92
5	7	0.00024	0.016	15.6	6.4	1	23	568	590	568	590	0.97
6	7	2e-07	1.4e-05	25.3	0.3	1	23	596	618	596	618	0.97
7	7	4.2e-05	0.0028	18.0	0.4	2	23	629	651	628	651	0.95

Sequence Information

Coding Sequence: ATGGACTTTGAAGTGATCGAAGTGAAGGACCTGGGGGAGATATTGAACCAGGCTAAGGAGGGTgaagaaatcatttttgaatCGGAAGCTGCTGAAGAAGGAGCTGATGAGGAGGTTGAAGAGATTGtagaaattattgaagaaattgaagaggTCGAAGAGGATgtagaggaggaggagcagCAGCACGACGTAGAAAGTAGCAATGAGAATGCTAATAAATCTGTAGAAAACAGTACAACGGAGATGCATGCTAAAGTGCAGTCTAAAGAGTCGGGAAGTTATAGAAAAGTTTATGGCTCGGGCAAGGAACTTGCTAAGAAGTCTGTCCAAAAACATTTGGATAACGGAACCATCAAGATGGAAAAGCAGCATGTTATGTACGATGCTGATGAAGATTGGGAAGACGAAGAGGCTGACGAATCCGAATCCAGGCACCATAATAATGAGACGAATCAAATCGAGCTAAAGAACAATAAGAAAACGTACACTATTAACAAGAAGTCTGTAAATATGCCTAATTCCGAGAACCCTGGAACTACCTCTGCCGAAGAACTCATTTTGAAGGCAGATAAATCCGGAATGATTCTTGAATACGATCACAGTATAACCGATGCTGTCAATGAGGAGAATAGCGGTCATGAGATAGTTAAAAATACAGAGAATAATCTGATTTATACTGTACTAGGTTCGAAGAAGTCAGTCGGATCTTCGAAGggtcaagaagaaaaaaattctgttgCCAGATTTATTAAGGTCGATCAAATAGAAGACAACGCAATCCCCGTTGAAGGGACCATTTACTACGAAGGAGAAGAAATGCAAACCCTCTACGTGGCACATTCTGTGAATGATAATGAACAGTATCAATATGAAGGTGTTGTAATGGAACAAGAAGGCTGGGAAACCGCAAGTCAGGAAGAAGGTagtcagcagcagcagcagcagcaggaagaagaaaattctcagGATCAGATCTTCCTCCACGAGGATGAAGACGGTCAACTTTACTTCAAGGATGACACAGGAACGTTGCAGCCTGTTTACTTGACTGCGGATGGAAACTATGCCATTGCCGAGGCCAGCAGCGACGATCAGGATAGCCAGGAGAGTCAGAGTCATCAGACACAAAACTCCAGGTCCTCGGACGATGGAAATTGTACAGCGGGTGATATGGAGTATCGAAATAACACAGAAGATAAACAAGGTTTGATCATCCCAACTTCCTCGCTCAACGAAATAGACAACGAGGACAATACCGTGACAATATCCTTAATCATCTCCGAGGATGAGCACGGTCAAAAGAGGACCCAAGTAATAATCCCCACCACGGATAATCTCAAATGCGAAATCTGTAACAAATCCTTCAAGACATCCTTCCAGCTGCTACGACACAATAGACTAAAGCACGCAAGAGAGGAGGACATCACCACCAGGAACTTCCCCTGTGACCTCTGTCCCAAGAGATACCCTGATCAAAATTCTCTGGCGCGTCATCGCAAGACTCACACCGGGGATCGTCCTTTCCAGTGTCTGGAATGTCACAAAAACTTCCCCACGTCGACGGCACTTCGCAGGCACCTCACTCTGCACAATCCTCAGTCGCGGCCGTTGCCCTGCATCTATTGCGGTCGACGTTTCCTGGAGAAGGCTAGTCTGGCCAAGCACGAGCAATCTCATCTGGCTGGTGACCAAAGGACCCATACCTGCGACATCTGCCACAAGTCCTTCATGCATGCGAGCGATCTCAATCTTCACAAGAAGAATCACGACCCGGATAAGAAGTTCGACTGCGAGGTGTGTGGTCGGGAGTTTAATCGGTTGAACAATTTGCAGCGGCACATGATGGTGCACCAGCAACAAGGCGCTAACGAGGAGATACTCTCCTGCGACGTATGCGGCATAACCTACAAGTTCATGAGTTCTCTTACGAGACACATGGTAACCACCCATATGAACCCGGAGAAGCTGCGCCAACAGGCCGAGGAACAACGTCGCAAGCGCGAGAACAACTACAGGCGTTACCTGGAGAACAGGAAGATGTACGAGACTCAGCATTCCGGGAGTTACGGGACTAAGAGGGGCTATCATCATAATTCCAGGGTCCTgaacgacgacgatgatgtcGCTTGA
Protein Sequence: MDFEVIEVKDLGEILNQAKEGEEIIFESEAAEEGADEEVEEIVEIIEEIEEVEEDVEEEEQQHDVESSNENANKSVENSTTEMHAKVQSKESGSYRKVYGSGKELAKKSVQKHLDNGTIKMEKQHVMYDADEDWEDEEADESESRHHNNETNQIELKNNKKTYTINKKSVNMPNSENPGTTSAEELILKADKSGMILEYDHSITDAVNEENSGHEIVKNTENNLIYTVLGSKKSVGSSKGQEEKNSVARFIKVDQIEDNAIPVEGTIYYEGEEMQTLYVAHSVNDNEQYQYEGVVMEQEGWETASQEEGSQQQQQQQEEENSQDQIFLHEDEDGQLYFKDDTGTLQPVYLTADGNYAIAEASSDDQDSQESQSHQTQNSRSSDDGNCTAGDMEYRNNTEDKQGLIIPTSSLNEIDNEDNTVTISLIISEDEHGQKRTQVIIPTTDNLKCEICNKSFKTSFQLLRHNRLKHAREEDITTRNFPCDLCPKRYPDQNSLARHRKTHTGDRPFQCLECHKNFPTSTALRRHLTLHNPQSRPLPCIYCGRRFLEKASLAKHEQSHLAGDQRTHTCDICHKSFMHASDLNLHKKNHDPDKKFDCEVCGREFNRLNNLQRHMMVHQQQGANEEILSCDVCGITYKFMSSLTRHMVTTHMNPEKLRQQAEEQRRKRENNYRRYLENRKMYETQHSGSYGTKRGYHHNSRVLNDDDDVA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01474953;
90% Identity: iTF_01474953;
80% Identity: -