Basic Information

Insect: Hartigia nigra
Gene Symbol: -
Assembly: GCA_031001745.1
Location: JARPRG010000037.1:4668-11343[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.3e-06 8.5e-05 22.8 2.5 1 23 567 589 567 589 0.98

2 8 2e-05 0.0013 19.1 1.5 1 23 595 617 595 617 0.98

3 8 1.9e-06 0.00013 22.2 0.3 2 23 626 647 626 647 0.98

4 8 7.9e-06 0.00053 20.3 0.1 1 23 653 675 653 675 0.98

5 8 2e-07 1.4e-05 25.3 3.0 1 23 681 703 681 703 0.98

6 8 4.3e-06 0.00029 21.1 2.1 1 23 709 731 709 731 0.98

7 8 7.9e-05 0.0053 17.2 7.7 1 23 737 759 737 759 0.98

8 8 9.8e-05 0.0065 16.9 1.5 1 21 765 785 765 786 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.3e-06	8.5e-05	22.8	2.5	1	23	567	589	567	589	0.98
2	8	2e-05	0.0013	19.1	1.5	1	23	595	617	595	617	0.98
3	8	1.9e-06	0.00013	22.2	0.3	2	23	626	647	626	647	0.98
4	8	7.9e-06	0.00053	20.3	0.1	1	23	653	675	653	675	0.98
5	8	2e-07	1.4e-05	25.3	3.0	1	23	681	703	681	703	0.98
6	8	4.3e-06	0.00029	21.1	2.1	1	23	709	731	709	731	0.98
7	8	7.9e-05	0.0053	17.2	7.7	1	23	737	759	737	759	0.98
8	8	9.8e-05	0.0065	16.9	1.5	1	21	765	785	765	786	0.95

Sequence Information

Coding Sequence: ATGTTACGTGTAAGAGGTGAACGGGATCCTTTTAAGCAATGTTCACCGGCCGATCCTAGAACTCGTGGAAGCACCTGTGCCATGAATCCTATTTCCTTTTTAGCTAAGCAAGGCACGTCTTTTgAGGTCCTACTCGCTCACAGTCGCGCTACCGGATACTGCGAACCTATTACAATTATTCTGGCGGAGGTCGAGGGTCCAGAATTGGCCGCCATACTTGGTTTCGTGTATACCGGAAGTGCCGCGGTACCGAAAGGACGATTGGACGCCTTCCTGAAAGCTGCCAAGGCTCTGAGCATTCGATTGCCACCACTACCGGAAATGATCACGTCCTGTATTGACGACTACAAAGTAGAGGACTTTGATGATGTCAAAGTAAATGCGCGATATCTTAGATGCGAGCAATATCATTGTCATGACGATTGGTGCCAAGCAAGGACCTTCGACAGGAAATACTGTTCTTCAAATTACACGGACAAGTGTCGTCGCGCCGTGCCGATGTCCTGCGAGGGATcattaaataacaaagtttATAACGCATCCAAGGACGAATCACTCGATGCATATCCTGTCGGAATCATACAAGCTCCTTACGTAACTAAAAATACAAACGGCAGGATCATTTTGGAAAAGGATTTAAACCGACTGGATTACCCGAAGGATCCCGTGAGCGAAAGAATTTTAGGAAATCCTGAAAAATCCAGTGAAAGTCATTCTTTCGGGAAGATCCACGAGATCAAGGATTTTTCAATGGGACTGATGGGAGCTTCCgaaaaaattatggaaattcacGAACATCCTGTAAACGTTCAAGATCCATCGATGATCTATGAATCCTCGCGAGAGCCTCATCGCATCCTAGAAAATTTACTCGAATTGCGTGTTCCTACGATCTTATCCAAGGTCGATCTTAAAGATCGACAAGCCTCTACACTACAGATCGGCGAAGATTTAACCTGTCGCGACAGATGCTGCAGatggaaatatcaaaaaagacACGTAGCCAACAGAGTTACAGCATCTCCATGGAGACAACTAGCTTGGCCCCATCATTCACCTAAAATCCAACCAATGGTACTGCAAAATTATCCGGAAAAGATTGAATCGGCACTAACCCGTGATTTTGGATCAGATCGATTCCCCGTTACTTCCGGTGTCGGTTTAAAGGATTCTTGCAGTGCAATTACCGAAAAACCATGCACATCGGAAATTTTCGAACGTGACAAACGAATTTCCGGCGAATCCGAAATATACATGAGAAAAGACGAAACTCTCTTGCAACAAGACTTTGGCACTGGTCAGACGATTTTTGGGAACATAACGAACctggaaaataattctcaaagtGTCGGTGAAGTTTctacatattttcaaaattcaactcAAGTCGCGACACCTTCACAGATCTTATTGCCCTCTGCCGATAATCAAGCGAATTGCACCGAGAGCATAGGCAGCGCGGGAATTTTGACTAAAAGTCCTACGCCAATTTCAAAACCGGAACTGTCATTGCCTGTCAGTAGACTCTGCGATTCGACGCCCGATACAGCCAACACCACAGCTAGCGCCATGACTGTTCCACCCATCGATAACGAAAGACCAAATTCAACTGACAAGAGTTACAGCACGCACAGTGACAGTAATAACAACGAAGCGGTAACAGGAGATCATCGAATTCCTACGGTAAACACCGACGATCATAGGTGCGATCAGTGTGGAAAAACTTTCGTGACCAGAGCCTCtttaaagGTACACAGTCGCACTCATTCGGGCGAAAAACCGTTCCGGTGCGCGGACTGCGGCAAGGAATTTTCGCAATTGCGAAATTACAAGTATCACCGCAGCGTGCACGAGGGTACGCGTGAGTTCGCAGCGACGTGTCCCGAATGCGGGAAATACTTCAACGACCGTGGCTACTTGAGTTCCCACATGAAGATCCACCGTAATCGTAAGGAGTACGCGTGCGGCGAGTGCGGAAAAAGTTTCAATCAGCGAGTGGCGTACAACATGCACGTGCGGATCCATACGGGAGTTAAGCCGCACCAATGCGAGCAGTGCGGCAAGGCGTTCTCACGGAAGATGCTACTGAAGCAACATCTCAGAACGCACTCGGGAGAGCGTCCTTATCAGTGCCAGGTCTGTCACAAAGCATTTGCTGATCGATCCAATATGACCTTGCACACGAGATTGCATTCGGGCCTTAAGCCTTATCAGTGCACCTTGTGCACCAAGGCGTTTACTAAGAAACATCATCTTAAGACTCATCTCAATTATCATACGGGAACTAAACCGTACTCGTGTCCTAATTGTTCCTTGAGATTCTCACAGAGCAGCAATATGCGTACACATTACAAAAAGTGCACTGTAAATAATCCTAATGGGATACAGGCGACCGCTGAACAAAGAATCAAGGCTAAGGATACCGACACAGCATCCTTGGTCCATGCCACAGGAGGAACTCATAGTGCTACACTTACGCCACCTAATTCGGATCAGGAATCTGGTATATATACGCCCGTAGGGAGAATCGTTACGGAAGTTAGACAATCTTAG
Protein Sequence: MLRVRGERDPFKQCSPADPRTRGSTCAMNPISFLAKQGTSFEVLLAHSRATGYCEPITIILAEVEGPELAAILGFVYTGSAAVPKGRLDAFLKAAKALSIRLPPLPEMITSCIDDYKVEDFDDVKVNARYLRCEQYHCHDDWCQARTFDRKYCSSNYTDKCRRAVPMSCEGSLNNKVYNASKDESLDAYPVGIIQAPYVTKNTNGRIILEKDLNRLDYPKDPVSERILGNPEKSSESHSFGKIHEIKDFSMGLMGASEKIMEIHEHPVNVQDPSMIYESSREPHRILENLLELRVPTILSKVDLKDRQASTLQIGEDLTCRDRCCRWKYQKRHVANRVTASPWRQLAWPHHSPKIQPMVLQNYPEKIESALTRDFGSDRFPVTSGVGLKDSCSAITEKPCTSEIFERDKRISGESEIYMRKDETLLQQDFGTGQTIFGNITNLENNSQSVGEVSTYFQNSTQVATPSQILLPSADNQANCTESIGSAGILTKSPTPISKPELSLPVSRLCDSTPDTANTTASAMTVPPIDNERPNSTDKSYSTHSDSNNNEAVTGDHRIPTVNTDDHRCDQCGKTFVTRASLKVHSRTHSGEKPFRCADCGKEFSQLRNYKYHRSVHEGTREFAATCPECGKYFNDRGYLSSHMKIHRNRKEYACGECGKSFNQRVAYNMHVRIHTGVKPHQCEQCGKAFSRKMLLKQHLRTHSGERPYQCQVCHKAFADRSNMTLHTRLHSGLKPYQCTLCTKAFTKKHHLKTHLNYHTGTKPYSCPNCSLRFSQSSNMRTHYKKCTVNNPNGIQATAEQRIKAKDTDTASLVHATGGTHSATLTPPNSDQESGIYTPVGRIVTEVRQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00253719;
90% Identity: iTF_01198882;
80% Identity: -