Basic Information

Insect: Hartigia nigra
Gene Symbol: prdm10
Assembly: GCA_031001745.1
Location: JARPRG010000351.1:98129-101704[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0032 0.21 12.1 0.6 2 23 490 511 489 511 0.96

2 14 3.3e-08 2.2e-06 27.8 0.5 1 23 545 567 545 567 0.98

3 14 0.00089 0.06 13.8 1.5 1 23 575 598 575 598 0.98

4 14 0.0039 0.26 11.8 0.1 2 23 616 637 615 637 0.97

5 14 0.0034 0.23 12.0 0.1 3 23 651 671 649 671 0.95

6 14 0.01 0.69 10.5 3.9 1 23 688 710 688 710 0.91

7 14 0.013 0.85 10.2 2.0 2 23 719 740 718 740 0.96

8 14 0.016 1 9.9 0.1 1 23 747 769 747 769 0.98

9 14 0.00015 0.0097 16.3 2.1 1 23 776 798 776 799 0.95

10 14 0.0018 0.12 12.9 3.9 1 23 804 826 804 826 0.98

11 14 3e-05 0.002 18.5 4.1 1 23 832 855 832 855 0.96

12 14 0.011 0.76 10.4 1.8 1 23 888 911 888 911 0.97

13 14 0.00055 0.037 14.5 1.9 1 23 933 956 933 956 0.95

14 14 0.0047 0.31 11.6 3.4 3 23 994 1015 994 1015 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0032	0.21	12.1	0.6	2	23	490	511	489	511	0.96
2	14	3.3e-08	2.2e-06	27.8	0.5	1	23	545	567	545	567	0.98
3	14	0.00089	0.06	13.8	1.5	1	23	575	598	575	598	0.98
4	14	0.0039	0.26	11.8	0.1	2	23	616	637	615	637	0.97
5	14	0.0034	0.23	12.0	0.1	3	23	651	671	649	671	0.95
6	14	0.01	0.69	10.5	3.9	1	23	688	710	688	710	0.91
7	14	0.013	0.85	10.2	2.0	2	23	719	740	718	740	0.96
8	14	0.016	1	9.9	0.1	1	23	747	769	747	769	0.98
9	14	0.00015	0.0097	16.3	2.1	1	23	776	798	776	799	0.95
10	14	0.0018	0.12	12.9	3.9	1	23	804	826	804	826	0.98
11	14	3e-05	0.002	18.5	4.1	1	23	832	855	832	855	0.96
12	14	0.011	0.76	10.4	1.8	1	23	888	911	888	911	0.97
13	14	0.00055	0.037	14.5	1.9	1	23	933	956	933	956	0.95
14	14	0.0047	0.31	11.6	3.4	3	23	994	1015	994	1015	0.98

Sequence Information

Coding Sequence: ATGGATCCAAGGGGCCCTCCCGAGGGGGCCCCTGTCGACTCACCAGAGATGCCACTTATGGACAAGGTAAATGAAGTTACAGAGTCCTGGCCTACGGAGCAGACAGGATCTACAGTAATATGTGATCAGCCTAGGAAAACTAACAACAGACTTCTTTTCTTGACCgTTGAATATGTGGAGGATCAATCTCGAGATTATTCCAGAGTCTTTTCAGCCTATGAACAGGTTTCCTTCTCTCCACGCGCAACGTCTCCTCTCTCTGATTTTGAACATCGTGTAAGTCCGCTGGATCCCAACATGAGTTCTGCAGCCAGGTATTCGCCAACTCCGGTTCAGCTGCCACCGTCGCCTTTCCATAATTCTGTGGTTGTCCTTCAAGGCCCATCCTCACCTCTGATATCCCCTCCTGAACCAAACGttcgaaataatattaattacaccACACCACTGGCCGATCAAACCACAACGCAGAATGTACCTCAAACCGATAATTCTCCAGATTTTGTTGTGGCTGGAAATGAGGAAGGGCTTGTTCCTGGGGTTGGGggtgaattaattttaatgcaGGGTTCCACACCTGAGTTAGAACCATCTACAGCGCCATTGATGCTTGCGGAAATACCTGCAACCGATTTCACGCTGACACGTGACTTTCTCGTGATGCAGGATGATCAAATAAATGTAATGGGGCCTTTCAAGAGTCAAAACGTCGAAATGAGTGAAGGACACACGAGCAATATCTCTCCTCCAGTAAATAGGAATAAAGGAAATGTGGCATGGACAAGTGCACCTGCACAAAAGCGTCAATCAACGAAGGACGAACTGGAAAAGAGCGATCAGAAAATCGATCCAGAGAAAAAGAACGTGCGAAGATCAAAACGGCAAATAAACGATAAGAAAACATTTTGGTGCGAAGAATGCGAGAGCGTCTGTGTAAATTCTGACGGATGCACCTCACACAACGTGCGTACTATCGCTGACCAACCGGTACCCTCGCGGGCTATAGCAACACTGCCAGGATCATATTTATCCCTAAATAAGCTGTCAATTCCCAACGTCGCAACCGGTGCTTCTAATTACGGAGTTTTCGCAAAGCGGAACATAAGAAGGCGCACGCAGTTTGGTCCTATAGAAGGAATTTTGTGCGCTTACGACGGTGCACCATTCGAGAATGCATTGCCGCTTCTTTACGAGTCGGACAATGGCGAATTCCTGAAGGTTGACGTTTCCAACGAGAACGCATCGAATTGGATGCGTTTTGTCAGACCCGCTCTATCTTACGTAGAACAGAATCTTGTAATCTGTCAACAAAGCGATGGAATCGTTTTCCTGACAACGAGAAACATCCTTCCAAAGGAGGAATTGAGAGCAGGCCCCAGCGTCGAGTACGCCGTTCGCAGAAATCTGAAGATGCTCGAGCCCGAATCGAAAGAGGAGAAGGAACTGAACAACGAGTTCAATGCTTGGCCCTGTTTTGAATGCAATCAGCGATTTTTAACCTCGGAAAAGTTACAGAAACACTTGAACGTTCATGACAATCCGAAGAACGAAACGAACTCACGAAATAAGCGCAAAAAGATTCACGTAGCatcgaataaatttgtaaagatCGTTGATGGACAGACGCTCGTCTACACCTGTCCTTACTGTCCCAAAGTCTTTCCACGAAGTTACAGTTTAAAGCGTCACCTCCTGATACATCCTGGAGCCAAAGCACCGCGCTACGAGTGTCCCACATGCGGAGAGAATTTTCTTCATCCGTACAATCGTAGTCGacacatgaaaatatttcatggtgAAAATccaaaggagaaagaaaacagCCGTCAGAATTCATCCGAATGGAAGTGCTCAACGTGCACTCTGATCTTTGGCAAGGCATCCCTTCTCAATTTGCATATTCTCATTCATGCTGCCGATAATATCGAGACTGGCAATCAATCGAGTATCTGTCCTCAGTGTGGTTCTGAATTTGAGAAACGCAGCGACTTGGTAAATCACGTCTCGCAACACGGTCGATTGCAAATGCCGAAATCCACAAAATTAACACCTCTGGCTGCATACAAGTGCACTATGTGCTATAAGCGGTTTGCTACCAAAGTGAGGTTGCAGCAACATTGCTTGGTACACGGGGCCGAGGACCAGAAGCCACTCCCATGCAATATTTGCCTGAAGAGGTTCATGAACAATTCGGCCCTGTCCTGCCACCTCAAGACTCATCGGGAGGACAAGCAGATATTCGAGTGTCCCATGTGCCGGCAATTATTTGATCAAGTTCTTATGCTGAAGGACCATATTGAAACTCATAGGAACGCGGACGAGACTTTTAGCTGCCCACAATGCCCACGCACTTTTACTAAATACTCAGTGATTCGCAAGCACATTAGAGCGCATCACTGCGAGCGAAAGCACAAATGTCAGTTCTGCACAAAACGATTTCCCACGGTGGACAAACTGAGGATGCATCTGCTCAGGCATTCGGATCACAGAGAATTTCATTGTGCGAATTGCGGAAAACAGTTTAAAAGGAAGGACAAGTTGAAGGAACACATGACGAGAATGCACAATTCGGAGCGGACCAGCCAGGAACAGGTGTCACAGAATAATCAGACAAAAAAGTTTGTGCCAAAGGTTAATCCGACGGATTATAATCGTTTCGTGTACAAGTGTCACCAATGCATGGTGGGCTTCAAAAGACGAGGGATGCTCGTCAATCATCTGGCCAAACGTCATCCGGACGTCCCACCGGAATCTGTACCCGAATTGAATCTACCGATTCTGCGACAAACGCGAGATTACTATTGTCAGTATTGCGAGAAGGTTTATAAGAGCAGCAGCAAAAGAAAGGCTCATATAGTAAAGAATCATCCTGGTGCTGCTTTACCACCAAGTAATCGGCATAAAGAAACCGATGTTTCTGGATTGCCGAATCCCACGTTTAGCCAGACCGTCGGTAGCATCACAACGACGCCCCAAGGCTGTCAATGGTGTCACAAGCAATACGCCAGCAAGGCAAAACTTTTGCAACATCAGCGCAAGAAGCATCCGACTCTTATGGAGCCGGCAGATCAGGTACCACGAGCACGAAATCGTCCATCCCAGAATCAAAATTTGCCACCGGCGCTCGTCGACAATAACTTTCTCATGTCTGACTACATACAAGCCTGCGACATAGATACTGATTTTCTCAAGccaaagataattaaaatctctGATGATGTCGATCTGATAGGTACTGGGCTCGACTTGGTGAGTCAGCAGTTCGTGCGAATGCGCGACATACGCTGA
Protein Sequence: MDPRGPPEGAPVDSPEMPLMDKVNEVTESWPTEQTGSTVICDQPRKTNNRLLFLTVEYVEDQSRDYSRVFSAYEQVSFSPRATSPLSDFEHRVSPLDPNMSSAARYSPTPVQLPPSPFHNSVVVLQGPSSPLISPPEPNVRNNINYTTPLADQTTTQNVPQTDNSPDFVVAGNEEGLVPGVGGELILMQGSTPELEPSTAPLMLAEIPATDFTLTRDFLVMQDDQINVMGPFKSQNVEMSEGHTSNISPPVNRNKGNVAWTSAPAQKRQSTKDELEKSDQKIDPEKKNVRRSKRQINDKKTFWCEECESVCVNSDGCTSHNVRTIADQPVPSRAIATLPGSYLSLNKLSIPNVATGASNYGVFAKRNIRRRTQFGPIEGILCAYDGAPFENALPLLYESDNGEFLKVDVSNENASNWMRFVRPALSYVEQNLVICQQSDGIVFLTTRNILPKEELRAGPSVEYAVRRNLKMLEPESKEEKELNNEFNAWPCFECNQRFLTSEKLQKHLNVHDNPKNETNSRNKRKKIHVASNKFVKIVDGQTLVYTCPYCPKVFPRSYSLKRHLLIHPGAKAPRYECPTCGENFLHPYNRSRHMKIFHGENPKEKENSRQNSSEWKCSTCTLIFGKASLLNLHILIHAADNIETGNQSSICPQCGSEFEKRSDLVNHVSQHGRLQMPKSTKLTPLAAYKCTMCYKRFATKVRLQQHCLVHGAEDQKPLPCNICLKRFMNNSALSCHLKTHREDKQIFECPMCRQLFDQVLMLKDHIETHRNADETFSCPQCPRTFTKYSVIRKHIRAHHCERKHKCQFCTKRFPTVDKLRMHLLRHSDHREFHCANCGKQFKRKDKLKEHMTRMHNSERTSQEQVSQNNQTKKFVPKVNPTDYNRFVYKCHQCMVGFKRRGMLVNHLAKRHPDVPPESVPELNLPILRQTRDYYCQYCEKVYKSSSKRKAHIVKNHPGAALPPSNRHKETDVSGLPNPTFSQTVGSITTTPQGCQWCHKQYASKAKLLQHQRKKHPTLMEPADQVPRARNRPSQNQNLPPALVDNNFLMSDYIQACDIDTDFLKPKIIKISDDVDLIGTGLDLVSQQFVRMRDIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01199619;
90% Identity: iTF_01474151;
80% Identity: -