Basic Information

Insect: Hartigia nigra
Gene Symbol: -
Assembly: GCA_031001745.1
Location: JARPRG010000642.1:898663-902773[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.12 8.3 7.1 1.2 1 23 357 379 357 379 0.97

2 20 0.99 66 4.3 0.4 1 19 386 404 386 404 0.97

3 20 0.012 0.82 10.3 0.9 1 23 428 450 428 450 0.98

4 20 0.014 0.95 10.1 0.4 1 20 504 523 504 525 0.94

5 20 0.043 2.9 8.6 7.7 1 23 537 560 537 560 0.98

6 20 0.099 6.6 7.4 2.8 1 23 565 587 565 587 0.97

7 20 0.0002 0.013 15.9 0.3 1 23 623 645 623 645 0.98

8 20 0.00059 0.04 14.4 0.1 1 23 651 673 651 673 0.98

9 20 6.5e-07 4.4e-05 23.7 0.6 1 23 711 734 711 734 0.97

10 20 0.02 1.3 9.6 0.9 1 23 740 763 740 763 0.90

11 20 0.12 7.8 7.2 0.2 1 23 770 793 770 793 0.92

12 20 0.00076 0.05 14.1 0.1 2 23 802 823 801 823 0.91

13 20 0.1 6.7 7.4 1.5 1 23 879 902 879 902 0.94

14 20 0.0017 0.11 13.0 1.0 2 23 918 939 917 939 0.95

15 20 0.00013 0.0088 16.5 1.7 1 23 953 975 953 975 0.98

16 20 0.0018 0.12 12.9 0.6 1 19 997 1015 997 1017 0.96

17 20 0.0018 0.12 12.9 0.3 2 23 1072 1094 1071 1094 0.95

18 20 0.12 8 7.2 0.4 3 23 1121 1142 1120 1142 0.89

19 20 0.11 7.5 7.2 0.8 3 23 1176 1197 1175 1197 0.92

20 20 0.01 0.7 10.5 0.7 2 23 1227 1249 1226 1249 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.12	8.3	7.1	1.2	1	23	357	379	357	379	0.97
2	20	0.99	66	4.3	0.4	1	19	386	404	386	404	0.97
3	20	0.012	0.82	10.3	0.9	1	23	428	450	428	450	0.98
4	20	0.014	0.95	10.1	0.4	1	20	504	523	504	525	0.94
5	20	0.043	2.9	8.6	7.7	1	23	537	560	537	560	0.98
6	20	0.099	6.6	7.4	2.8	1	23	565	587	565	587	0.97
7	20	0.0002	0.013	15.9	0.3	1	23	623	645	623	645	0.98
8	20	0.00059	0.04	14.4	0.1	1	23	651	673	651	673	0.98
9	20	6.5e-07	4.4e-05	23.7	0.6	1	23	711	734	711	734	0.97
10	20	0.02	1.3	9.6	0.9	1	23	740	763	740	763	0.90
11	20	0.12	7.8	7.2	0.2	1	23	770	793	770	793	0.92
12	20	0.00076	0.05	14.1	0.1	2	23	802	823	801	823	0.91
13	20	0.1	6.7	7.4	1.5	1	23	879	902	879	902	0.94
14	20	0.0017	0.11	13.0	1.0	2	23	918	939	917	939	0.95
15	20	0.00013	0.0088	16.5	1.7	1	23	953	975	953	975	0.98
16	20	0.0018	0.12	12.9	0.6	1	19	997	1015	997	1017	0.96
17	20	0.0018	0.12	12.9	0.3	2	23	1072	1094	1071	1094	0.95
18	20	0.12	8	7.2	0.4	3	23	1121	1142	1120	1142	0.89
19	20	0.11	7.5	7.2	0.8	3	23	1176	1197	1175	1197	0.92
20	20	0.01	0.7	10.5	0.7	2	23	1227	1249	1226	1249	0.94

Sequence Information

Coding Sequence: ATGGACGAGGTGGACCAGTTGCGGAATGTTGAGGATTTGTGCAGATTATGCCTATCTGTCGATCAGCCAAAGTCCTCTATATTTCACGGGCAAGATTCTTCTGTTTCGCTTGCTACCAAAATAGAGGCATGCCTGTCGATCGAGATTTCTCAAGGCGACAAGCTCTCCACCACTATATGCAACGAGTGTGTGACGAAGGTCAACCAGTGGCACGCTTATAAAGAATCCTGTCTACGGTCCCAGGATAAGCTACGGGAATGGCTGGCAAAACAGACCTCTTCAGAGTTTTTGGGAACTGCTGTGAAAGAAGAGCCTGCAGAAATAGACTATAACGTGGAGAATGATGAGATCTTGCCTGAATGCATTGAACCCAGTGAAAAAgatTCTAACTACCCACGAATATCATGCATCGACGTTCAGGAAGATTCTgaggaaaaagagagtgaGGATGTCAACGAAGGATCACAGGCTACGGAGTTGCCTGAAAATGTAGTAAATTCGGAAGTTTCAGGTAGCCCCTCCAAAGAACCAGTCCACGAGGAACAGCTTCTGATTAAAGAGATCAAGAAAGAACCACCaacaaattatgaaaataatcccAATATCGAAATGGAGTCAGTGCTAGGTGGACAGCTGCTTCTCAATCCTTTAgccataaataaaaacaaaccaGACATGATAATGGAAGCAGATTCAACTCAGAAAACAACTTCAGCAGTAGTTACtgtcaaaagaaaagtaagacGCGGTCCACATACGCATTACAGAGGACACCGAGTCTTCAAACAGAAATGTTCCTTCTGTCAGATTCACCTACATTCAAAGTTCACCTACGCTAAACATATGGCGAAATTTCATTCGGGCGCGGAAAATGTTCAAGAGAATGACAACGCAGAAGCgccaaagaaaaaagcgaAGGCGCCATCAACTCGAAAGACAAAAGCCATCACCCACGGATTAGAAGAAGTTGAAGAGATGATCGAGGACGTGGAGGAAGAAATTGATATCATGGACCAAGACTCGTCCCTTTCGCAAGTTCAGCAAAGCATAATCAGTCAACTGAAGACGTTCTCGTGTTATTCTTGTCAGCTATCATTTCCTGACCGTCGAAGTACACTGTATCATATTCGGGAACACATGCCTGACTTACGACCTTACACTTGTGTAGCCTGTCTAACTGAATTTTCAGATAGGTCCACTTATCAGTCTCATTGTGGCGCGTCTGTCGAGTGCGCCATGAAGATAGCCCTTGTGGTACCCACAATGGGTGTCGAAAAGCTCTTCACGTGTAACATGTGTCTGCGGCCATTGAACAATCGCAAAGAGCTGCTCAGTCATTTGTCCAAACATTCTGACAAGCAGTACGCAAAATTAACGTCATCAATGAGCGTCCCACCCAAGCTAAAACCCATATCCTTACTGACATCGGAGAAAAGGAATACTGTGTCCGACGATCATATCCATGCTACCTTGCCAAATCCTTATAAAAATGGCGACCCTGCGTTCAATCACCAGTGCGACTTCTGCGGAATGATATATCGATACAAGCCAAACATGTTGAAGCACCGTGATATATGCAAGAAGCTTCCGCCGGATGTCCGTACTGTCTACAAGTGTGTCCATTGTGGCATGACCTTTAGGGTCTTCAAGAAGTTTCACTCTCATACAAGAATGAAGCACAAGAAGAGGGAATTCGTTTGTTCGAAATGTTATGGGAAATTTCGTTCGCCGCGTGATTACCTGTCCCATCATGAGAGTCATATGAAGGTCACGTCAAAGAACGAAGGCTACATGATACTGGAGAACGGAGAGAACGTGATGCAGGATGATGAAGAGAGCCACGTATCAAGGatcaatgagaaaaagtataaCTGTGGACTGTGCGACATGGATTTTGGAAGTAGATCCGAGCTAATGAAGCACAGGAATGTGCATCTGAAGGTGAAGATCTACTCGTGCGTCATCTGCAGGAGCATGTTCAGTAGTGCAGGTGCTTTGGAGATACACATGAAGGAACATGGAATCGAAGATCCTAGGGAAAGGAAAGCAAACAGTTCTTGCGTGGAATATAGAACTCCTAGGGATGGCGAACAGAGTGCAGGTCACACTATAAATTCCAGTGAGATCAGGTTCAACTGTGACAGTTGCGACAAGAGCTTCTCCAACCTGGCAAATCTGCGACGGCATGTCAGGAGTGCGCACACGTCGAACGAGGCCTTCAAGTGTCCCGACTGTTTAAAGATCTTCAAGGACAAGATCATTTACGAGCACCATGTCAAAGCTGAGCACAAGTCTTCAAAGCCGTCGTATCAGTGTATCAAGTGCACGAAGATCTTCGCCCTGCATGCGAACCTCGCACTGCACATCGTGAACGTTCACGAGAACAAACTAGGTACGCGATTGCAGTGCGACATTTGTGGTAAAAAATTTATCGAGGAGACATCCTTGCGGATTCATAAAGGCTGGCACGCAAGGGCCAATTGTCGTTTGAACGCTGACAAGTTCACAGACAGGAGGCACAGCGATCATGATGTCAAGAGGATAAAGATCGAATCTACCACTGTGGATCCGGTGAAGCCGGCCAGAGCCAGGAAGTCCTTGCCAAGTGTGCCAACGACTAGGCAGTTGCATCAATTTCAGTGTTACCTttgtcatgaaaatttcagGGAGATTAATCGTCTCAAGGTGCATCTTCAGGACGTTCACAATGCGGACGGCAAGGACGAGAAGAGTCACGTGAACAAGGAGTTGCACTGTGAGCTCTGCACCAGCGTGTTCCAGGACAACGACAGCTTGCAAAAGCACATGCTGTGGCACAACGAGAATCCAATTCTGAGTACGCAGAGCCACAAGAATTTCCAGTGCGACGTTTGTGGCAAGTATTACACCCTGAAGAAGAGTCTGGCGCGTCACAAGAAGCTTCACAAGGCAACAGCAGTGGCATCCTTGAAGTTACAGTCTCTAGCAAGAAAGCAAATGGCTGCTCTGTTTCAGTGCTCGACATGCCGTAAGGTCTTCGATACCTACATGGGTCTGCAGAGGCATAAAGTCTGTCACGGATCTGAATCGAATACACAAAAATCTTCCCAGTCGGTCCGTGCCACGAGAACATCTACGAATATCGAGCAAGAGGATCTAAGGAATCCTAAAATCGAATTAGATGACTCACCGGAAGTCGATACGCATGATAACTTTGGCGCGAAGAAAGCCCTAACGTGCACCCTCTGCAAGAAGGTCTTTCCGGGAATGAGTATGCTCTTGAAGCACAAACAGGTTGCTCACAACGTACGTTACAGTAGACAATCGAAGCAGCCTAAAGTTGAGTTCATACCGATTCTCCAACGAAATGGTGGCGTCGCCTGTAATCTTTGTTCCAAGGAATTTCCAACGTTGCCAAGACTGAAGCAACACTTCACTCTGGTTCATAAATCCGAGCACAGTGGCTGCACAGCTCATTGCTGTGACACTTCGAACGCTACTGTATccaaaacgaagaagaaggttcATGGCGGACTCGTGGTCTTCTGTAAACTGTGCGAGAAGCACTTTGACAACAAACCTGATGTTGTGGATCATCTGATCGAGAAGCACAGATGTGGCGGCGATTTTGATAAGCAGGATAAATTCTTTTCCATGCTCAACTTGGACAGTTACGTGGTGAACGGTGCGAACGGTACTGTCTGTCCTACTTGCAATATCAAATATCCAAATTTGAGATCCctcaaaattcattatttcaaatttcatgattGTATATGA
Protein Sequence: MDEVDQLRNVEDLCRLCLSVDQPKSSIFHGQDSSVSLATKIEACLSIEISQGDKLSTTICNECVTKVNQWHAYKESCLRSQDKLREWLAKQTSSEFLGTAVKEEPAEIDYNVENDEILPECIEPSEKDSNYPRISCIDVQEDSEEKESEDVNEGSQATELPENVVNSEVSGSPSKEPVHEEQLLIKEIKKEPPTNYENNPNIEMESVLGGQLLLNPLAINKNKPDMIMEADSTQKTTSAVVTVKRKVRRGPHTHYRGHRVFKQKCSFCQIHLHSKFTYAKHMAKFHSGAENVQENDNAEAPKKKAKAPSTRKTKAITHGLEEVEEMIEDVEEEIDIMDQDSSLSQVQQSIISQLKTFSCYSCQLSFPDRRSTLYHIREHMPDLRPYTCVACLTEFSDRSTYQSHCGASVECAMKIALVVPTMGVEKLFTCNMCLRPLNNRKELLSHLSKHSDKQYAKLTSSMSVPPKLKPISLLTSEKRNTVSDDHIHATLPNPYKNGDPAFNHQCDFCGMIYRYKPNMLKHRDICKKLPPDVRTVYKCVHCGMTFRVFKKFHSHTRMKHKKREFVCSKCYGKFRSPRDYLSHHESHMKVTSKNEGYMILENGENVMQDDEESHVSRINEKKYNCGLCDMDFGSRSELMKHRNVHLKVKIYSCVICRSMFSSAGALEIHMKEHGIEDPRERKANSSCVEYRTPRDGEQSAGHTINSSEIRFNCDSCDKSFSNLANLRRHVRSAHTSNEAFKCPDCLKIFKDKIIYEHHVKAEHKSSKPSYQCIKCTKIFALHANLALHIVNVHENKLGTRLQCDICGKKFIEETSLRIHKGWHARANCRLNADKFTDRRHSDHDVKRIKIESTTVDPVKPARARKSLPSVPTTRQLHQFQCYLCHENFREINRLKVHLQDVHNADGKDEKSHVNKELHCELCTSVFQDNDSLQKHMLWHNENPILSTQSHKNFQCDVCGKYYTLKKSLARHKKLHKATAVASLKLQSLARKQMAALFQCSTCRKVFDTYMGLQRHKVCHGSESNTQKSSQSVRATRTSTNIEQEDLRNPKIELDDSPEVDTHDNFGAKKALTCTLCKKVFPGMSMLLKHKQVAHNVRYSRQSKQPKVEFIPILQRNGGVACNLCSKEFPTLPRLKQHFTLVHKSEHSGCTAHCCDTSNATVSKTKKKVHGGLVVFCKLCEKHFDNKPDVVDHLIEKHRCGGDFDKQDKFFSMLNLDSYVVNGANGTVCPTCNIKYPNLRSLKIHYFKFHDCI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01474139;
90% Identity: iTF_01199608;
80% Identity: -