Basic Information

Gene Symbol
-
Assembly
GCA_031001745.1
Location
JARPRG010000495.1:272639-279709[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 8e-06 0.00054 20.3 1.0 1 23 189 211 189 211 0.98
2 31 0.0035 0.23 12.0 1.9 1 23 234 257 234 257 0.96
3 31 0.00029 0.02 15.4 1.0 2 23 264 286 263 286 0.96
4 31 0.00041 0.028 14.9 0.5 1 21 306 326 306 327 0.95
5 31 0.0012 0.08 13.4 0.8 2 23 424 445 423 445 0.96
6 31 0.019 1.3 9.7 0.3 1 23 451 474 451 474 0.91
7 31 0.00015 0.01 16.3 0.1 1 23 547 570 547 570 0.96
8 31 0.013 0.86 10.2 0.7 1 23 576 599 576 599 0.96
9 31 0.15 10 6.8 1.5 1 23 612 634 612 634 0.97
10 31 3.3e-05 0.0022 18.4 0.6 3 23 679 700 677 700 0.96
11 31 0.01 0.69 10.5 0.8 2 23 763 786 762 786 0.94
12 31 4 2.7e+02 2.4 0.0 2 23 795 817 795 817 0.84
13 31 0.053 3.5 8.3 0.0 2 23 824 846 823 846 0.95
14 31 1.7e-05 0.0011 19.3 1.2 1 23 854 876 854 876 0.98
15 31 0.054 3.6 8.2 1.2 3 23 908 930 906 930 0.91
16 31 0.00027 0.018 15.5 3.3 1 23 933 956 933 956 0.97
17 31 0.038 2.6 8.7 0.5 2 23 963 985 962 985 0.95
18 31 0.0042 0.28 11.7 5.1 1 21 1012 1032 1012 1033 0.95
19 31 0.0035 0.23 12.0 1.8 2 23 1047 1068 1046 1069 0.93
20 31 0.27 18 6.0 0.9 1 23 1072 1095 1072 1095 0.94
21 31 0.021 1.4 9.5 1.4 2 23 1102 1125 1101 1125 0.91
22 31 1.2 83 4.0 0.2 2 23 1133 1155 1133 1155 0.95
23 31 4 2.7e+02 2.4 0.0 2 23 1162 1184 1161 1184 0.87
24 31 0.29 19 5.9 2.7 2 23 1193 1215 1193 1215 0.96
25 31 3.9 2.6e+02 2.4 2.0 2 23 1221 1243 1221 1243 0.92
26 31 3.4 2.2e+02 2.6 0.0 3 23 1306 1327 1304 1327 0.93
27 31 0.00031 0.02 15.3 0.9 1 21 1353 1373 1353 1374 0.95
28 31 0.64 42 4.9 1.3 2 23 1473 1495 1472 1495 0.94
29 31 0.79 53 4.6 0.4 2 23 1502 1524 1501 1524 0.94
30 31 0.89 60 4.4 2.5 1 23 1535 1557 1535 1557 0.97
31 31 0.051 3.4 8.3 0.2 3 20 1566 1583 1566 1585 0.94

Sequence Information

Coding Sequence
ATGCAGGCTGATCTATGTGCCACTGGTGATAACCGAATAGCGGAGGACGACCGTTTGCCAAAGTGTTTATGCTACCGGTGCATGTACAatctggaaaatttttatgacTTCAGAACTGCATGTGTCAATGCGGTGGCATTGTTGGAAAGATGTTTACCCTCCGGTGATACGAGTAACAATGGAGCGCAGACTCATATGGATCAGTATACAGAGCTGCGCTCTGAACTTctcaaagagaaggaaaatatgCCTATACTCATTCCTGAAGCCCCCATAGTCAATCCCAATGCAGCACTGGGCACGCCACCAAGACTGAATTCTGATGGTGAAGCGGATCATGAGATTGAAGAGATACTTGATCAGAGTGGCACCGATGAAGgtcAAGACGAGCACGAGGATCCTAAATCGGACGAGTATGAAATGGATATGGAAACGAATCCAAGTGATTTCCTGGAGATGACGTCCATCGTCACTGACGACGTCGAGGACATACGATCTCTTCCTATGCCACTTGAGAAACAAGACACCAATGTTTTCCAGCACACGTCGGAGCAGCACGAAGTCTACGTCTGTTCTTTGTGCAACAAAGCCTTCAGCTCGAAAGGGCATCTCTCCTTGCACGCTAGGATCCACGTGGGTGCTGGTGATGTAATCGGTGAAAAAGTTATCACTGACGATCACACTTCCTACAAGAGACCTTATCAGTGCGACCTCTGCAATAAGTCGTACTCGACGGCAAAGCACAGATGGGGACACGTCTCCACGACGCATAGGGGTCATCCAGCTGTTACGTGCAGATACTGTTCTCGAATCTACTCGACGAGAACGAACCTGGAGGAACACATAAAGTCTCGTCATGCGGGCTTACCACCGCCTCCGGAATTACCACTTCCCTACGTTCAACCTGACAACAGGTTCCAGTGCAAGACATGCCCAAAGATGTACACCAACATCACCGATCTGAATAAGCACAGTCGAGTCTGTCTCGGCGAGAGACGTAGAGAACTACCGAACAAGATTTCGGTTCAGAAGAGTAAGAGTCTTGTAGACACGTCGGATCTATCTAGTATGGACTCCGATGACGAGAGTAAGGACTATCGGGATGCCGAAGCGAAACTCGCCAAGAATCCCCAGCTGACTATACTTAAGCAGGCGCTGATCAAGGGCGACAGCCTTAAGCGGGATTACGAGGACAAAAATAGAATTGGCTCGAAACCTAAAAAGGTTGCGAGGACAGACAGCAGTGAAACCGATGCCCAGAAGAGGTGGTACTGTGAAACCTGCCCGCAGAATTTTACGTCGGTGGAGCATTTGAAGGAACACGAAATGACCCACGACGTGGATAAACCCTACATCTGCATCCTCTGCGAGAAGGACTTCGTTCTGAAATCTTCTCTCAGTAGACACATTTTATCCTCTCACGGAGTCGATCCTTGTCCAATAGTCGAAAGTGATAAGTGTCTTAAGAAAACAGTGGCTAATATGCAAATGCGTAATAAACAGGCACAGATCATCTGCAACGAGTCCAAGTTAACCAAAGAAGCATCCCAATCTCCATTTTCGCCAGAGATGAATATGGATAACGACGAGGAGGATCGTGAGAGCGGCCACGAGAATATGATTGAAATCGAGACTGTGTTTGTCTGTGAAATATGCACAAGGGATTTCAATGATCGTGCGTCATTGTGGTTACACATCAGAGCGACGCACAAAGAATTTGCAGCGTTTGCTTGTGGAGTCTGCTTAAAGATTTGCTCGGACAATACTCAACTCTTGAATCACGTTAATATGTACCATGGTGGCTCAAAGCTTCAGGTCTCGGAACAGAGAAGGTATAGCTGTACAATCTGCGGTAGGCAACACGATTCCAGGAAGAAGCTCATCACTCACGTCTCCATTCATAACGTCGATCCTGGTTATGATCCAGCGAGTTTTGTTCAACTGAacagtaattattataatgagaATCTGAATAGTAACGAAGCCAATGAACAGCCTATTGATTTTGATGGCGAGGACGGAGAGAAGATCGACTGCTATATATGTTACAAGTCTTTTCCTAATGAGGATCATCTCATTAGGCATCAGCGGAATGCTCACAAGTCCGAACCCATGGTGCAGATGGGTGATCCTGGCAATGGTAATGGATCCGGTTCTACGCCAGGCAACGGGAATCGTGCTCAGTATCATTTGTTCTTCGTTTGTGAACTCTGTGGAAGTTCGCATCCAAGTAAATGGGAACGCTGGCTACACGTTAGTGGAGTGCACAGTAATGAACCTGCCATAAGGTGCGAGCGCGAAGACTGCGGAAAGATATTCGCTACCAGGTCGCTTCGCAACGAACACGTGCAGCATCATCTTCTTCAGGGTGCTTCGCCAAATACCTGTGAGATCTGCGGGAAGCTGTGGGGCAGTCGTGTGGATTACTGGAAGCATGTAATGGGTGTGCACTCTGATACGGTACCTTTAATCTGCGGGGTATGCCTGAAGGTTTTCCCTGATGTCATCCAACTTAGTGCTCACGTCAAGTCGAATCATTGGCCTTTGACCAACGGAGACTTCAGCTGCGACATCTGCGGAAGGCCGTACTCCAATAAATCAAAAATGTCCAGGCATAGAAAAATACATGGTCTGGATATGGATAGCTACGCCAACAGCACTCTACACGAGGCTATGAACGATTCTAGGCTAGACCAGGGTTCTCATGAGAGCGACCTCATCTGCGAGATGTGTTCCGACCTCAAATTCACTAACCTAGATGACCTGTGCAACCACAGAAGAACAGTGCATGGACTATTCCCTTGTGATCTTTGTAATAAGTGCTACGGGCGGACCTCACACCTTTGGAAACACGTCAACCGCGTTCACAAGGGTCACGAAGACGTCACCTGCAGATACTGCATGAAGACCAGCGCCTCGAGGGATCATCTCGCTGCTCACATAGCCAAGATACACAGGTACGAGCCGGAGATGAAGAAGGAAATAAGGGAGTCATCTATCTTCAAGTCGCCTAATCCTGAGGACGAGACTCTTCATCATTGTGAAAAGTGTAACAAAGGTTTCCACAAGAGGTATCTTCTCCGTCGTCACATGAAAGGCTGTCAGAATTACAGAAAGGATCCTGGTGCATTGCTCACCAGGTGTCGTGCCTGCGAGAGGATATTCAAGGATCGCGCTAGTCTTCAGAAACACATTGAGAATCATCACAGTACCTATACTTGCCATCTCTGCGATGAGACCATAACCTCCAAGTTAGGTATCATGACGCATAATAGAGTGAATCACATGAACCATCCCGACCTCACTTGTGACTATACTAGTTGCAAGAAACTATTCCGTACCAAGGAGGACCTGGAGTCTCATCGCAAAGATCACAAGTACCTTGGTACTCCTAACGTCTGCGACTTTTGCGGTGATACTGTTGAGAATAAGCTTAAGCTCAAGATGCATATACTGTCCTTACATCGTAATGAAATTGGTGTATCCTGTGGTGTCTGTCTTATACCCATGAAAGATCCGAAGGAACTCAAAAGACACGTAGAGGACGTTCACAGGAGTATACTGTCTAAGCCTAACACCTGTCAGGTGTGTGGTAAGCAGTATGCATCCAAGTGGAAGGCATTCGACCATACGAAAAAGTGCCACGGCAAGGTGTTCAGGACGTGTAAACAGTGTCTCGCAGTGTTCACAAGTGACGAGGATATAAAGCATCACTACGAACACGTTCATAATGTCCCCAAGGATCAGCTCGCTGGTTTTGAGTTCAGGTTGGACGTCGGTCCCAAGCAGGAGGAGTTTGACACCCCTGATGTCGTTGTTAAGGAAGAGCCTGAAGATCTTGATTTCTACGAGGAGCCTTGTGGGGAAGACTACCACAATTCCAAGAGAAGGAGATCGTTGTCTGATACTCTGGACTGTGAGATGTGTCCCGAGATCTTCCTGAACGACGTCACCCTGGCCGAGCATTACAGAAACGTTCACAATACGGATCCTATGCGTATATTCAAAAAGCTAAAGCTCGACTCTGCGAAGCGGAAGACGAAAAATCGCGAAAACTTTGAATGTAAGAACTGCACAAAGCAGTTCTCCACGAAGACTCTCTTCTGGAACCATATAAACGTCTGCTCCATGCGTAATTCTGTCAACAGAGACGACAGGGTTTACCCCACGTCCATCCTAGAGTCTCACCTCAAGAACAACAATCAGATCAAAAAAGAGGAACCTGAACCCATTCTCAATGAGTCCAATCTGAACATCCCAGACTTCAATCTCTTCGAGGATATTAATATGCAGCTCTCTGGACAGAAACCTGTACCTAACCTCATGCCTCTGTCTCATATGAAATCGCTGTCCAGTATGAAGTGTTCGAGAAAGGACTCCAGGAAGGTGTACGACGAGTCAACGAATACCGAGTGTGCCTGTGAAGTCTGTGGTAAACAGTGGCCTGCTAAGAAGCATCTCTGGCAACATCTCATAAGATTTCACAGAGCTGAAGCTGCTGTCACCTGTGGCGTTTGTCTGAAGCTCTGTAAAACTTATCAGGATCTGGCGGATCATCTCAAGGCAGCCCACGAAGCCATCCTTACCTGCGAGGGTAACAATTTCACTTGTAAAACCTGTGGCAGGTATCATAATGCTAGAAGTAAATTACTCTTGCATATGAGCATACACATCAACTGTAATGGTAGCAGCTGGTGTAGAAAATGTCAACAGAGTTTCGAGAGTGAAAGTAAACTCAAGGAACACGTCGCCATATGTACTGGTGGTAATCAGGTAGAGTACGAGGAGCATAGTAACGACCTGGAGGATGCTGCCAAGAACAATGAGAATGATCACGATTATAAGAATATTCTTATGGAGGATGAGAATTCCTTGATGGAGGAAGTCGACGAGGTCGAGGAAGTTGAGTTTGAGACCGAAGCTTCTGATAATCGTGAGGATAGTAATTCCGACGATAGCGATGATTCCGATAGTGGTAGCAATCCTAGTAGTAGTAATGATGAGgataatgagaatgagaatgaggaCGAGGCTGAGTGTAGGACTAACAGCAGAGCTACTGGAGTTAGCAGTGACAGTGAGAGTGAAGATCAAGATTCTGATGAGGATAACGTTAATGTAGCTAAGGATCATCGCCTGAAGGAGAACGAAGATATCAAGTGTAATACCATTGTCAAGACAGAACCTGAGGATGAGGAGTGCCACTATCATCAGGATAAGGAAGAGTCTCCTGTATTGAAGGTAGACGTATATCCTATGGAGGAAAGGAAGGATCATGAGAATCATGAGATTGTCAAAGTCGAGGTTGATGCGCCGGATTACTCTGACGATGACGCAGATGAGGATGAAGATGATGGACCCCCGGTACTTAGTCCAATGATGCCATTACCACCGGTGCAAGAAGCAGAACATGACAGCAGACACTCGGACGACGAGATAGAGCATGAATTAACGCCTATGGTGTCTATCAAAAAGTCAGATGAGACTGAAGGGGAGGACGATGATGATCACCAGGAATTGAAGGATCAAATGGAAAATGGTAAGTCGACCTCCAGTTCGTCAGAGTATTATGAGAAATCTGATCCTCAGAAGGTGAGTCCAAATGTGCCTTCGCTAGTAGTGGGAGAATCACAGTCAGATACGGAAGAGGAGGGCGAGGGTGAGGATGACGAAGAGGAATACGATAGCCAAATGGAAGCCATGGATCAGGacgatgaagaaaataaaaggttcATCACTTACGACACTCATAACACTGAGGACTCGGTCGAGGGTAGCTTCGCAGAGAATTCCGAAGACGAGACAATGGAGGTCGAGGTTGCCGACGGAGATGGTAGTGTACAGATACACGACCTGGACGGTACTGTACTGATGGTAGCGAATGACTCAGACGGTAATCAGATTCTGATCCAAAGGAATGTCGCCGACGTAATAGAGAATGACGATTCCAATCCGGAAGTCACTGAGTACGTCTATCAGGAAGGGCAAGAGTACGAGCTGGAAGAAGGTTATGTGGAGTCACAGCAAGTAGACGAAGTTCAAGACGTCTCCGACGAGGTTCaagaagaggaggatgagATCGTTAATGAGGAGTCCGACGAAGGGGTCGTTACAAGGGAAGACGAAGCTGACGAAGACGAAGATATGGAACCCGAacaagaggaggaggaagaggaggagcaGGAAATGGAAGACTGTGAAGAGGAGGTCGTCGACGAGGACGAAAATTCTCAGAAACCGATTAACAGTGCCAAAACCGAAGTGTCAAGGACGTAA
Protein Sequence
MQADLCATGDNRIAEDDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLPSGDTSNNGAQTHMDQYTELRSELLKEKENMPILIPEAPIVNPNAALGTPPRLNSDGEADHEIEEILDQSGTDEGQDEHEDPKSDEYEMDMETNPSDFLEMTSIVTDDVEDIRSLPMPLEKQDTNVFQHTSEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCRYCSRIYSTRTNLEEHIKSRHAGLPPPPELPLPYVQPDNRFQCKTCPKMYTNITDLNKHSRVCLGERRRELPNKISVQKSKSLVDTSDLSSMDSDDESKDYRDAEAKLAKNPQLTILKQALIKGDSLKRDYEDKNRIGSKPKKVARTDSSETDAQKRWYCETCPQNFTSVEHLKEHEMTHDVDKPYICILCEKDFVLKSSLSRHILSSHGVDPCPIVESDKCLKKTVANMQMRNKQAQIICNESKLTKEASQSPFSPEMNMDNDEEDRESGHENMIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICSDNTQLLNHVNMYHGGSKLQVSEQRRYSCTICGRQHDSRKKLITHVSIHNVDPGYDPASFVQLNSNYYNENLNSNEANEQPIDFDGEDGEKIDCYICYKSFPNEDHLIRHQRNAHKSEPMVQMGDPGNGNGSGSTPGNGNRAQYHLFFVCELCGSSHPSKWERWLHVSGVHSNEPAIRCEREDCGKIFATRSLRNEHVQHHLLQGASPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPDVIQLSAHVKSNHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDMDSYANSTLHEAMNDSRLDQGSHESDLICEMCSDLKFTNLDDLCNHRRTVHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRYCMKTSASRDHLAAHIAKIHRYEPEMKKEIRESSIFKSPNPEDETLHHCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCDETITSKLGIMTHNRVNHMNHPDLTCDYTSCKKLFRTKEDLESHRKDHKYLGTPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKELKRHVEDVHRSILSKPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTSDEDIKHHYEHVHNVPKDQLAGFEFRLDVGPKQEEFDTPDVVVKEEPEDLDFYEEPCGEDYHNSKRRRSLSDTLDCEMCPEIFLNDVTLAEHYRNVHNTDPMRIFKKLKLDSAKRKTKNRENFECKNCTKQFSTKTLFWNHINVCSMRNSVNRDDRVYPTSILESHLKNNNQIKKEEPEPILNESNLNIPDFNLFEDINMQLSGQKPVPNLMPLSHMKSLSSMKCSRKDSRKVYDESTNTECACEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKTYQDLADHLKAAHEAILTCEGNNFTCKTCGRYHNARSKLLLHMSIHINCNGSSWCRKCQQSFESESKLKEHVAICTGGNQVEYEEHSNDLEDAAKNNENDHDYKNILMEDENSLMEEVDEVEEVEFETEASDNREDSNSDDSDDSDSGSNPSSSNDEDNENENEDEAECRTNSRATGVSSDSESEDQDSDEDNVNVAKDHRLKENEDIKCNTIVKTEPEDEECHYHQDKEESPVLKVDVYPMEERKDHENHEIVKVEVDAPDYSDDDADEDEDDGPPVLSPMMPLPPVQEAEHDSRHSDDEIEHELTPMVSIKKSDETEGEDDDDHQELKDQMENGKSTSSSSEYYEKSDPQKVSPNVPSLVVGESQSDTEEEGEGEDDEEEYDSQMEAMDQDDEENKRFITYDTHNTEDSVEGSFAENSEDETMEVEVADGDGSVQIHDLDGTVLMVANDSDGNQILIQRNVADVIENDDSNPEVTEYVYQEGQEYELEEGYVESQQVDEVQDVSDEVQEEEDEIVNEESDEGVVTREDEADEDEDMEPEQEEEEEEEQEMEDCEEEVVDEDENSQKPINSAKTEVSRT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00295442;
90% Identity
iTF_00297739;
80% Identity
-