Basic Information

Insect: Hartigia nigra
Gene Symbol: -
Assembly: GCA_031001745.1
Location: JARPRG010000006.1:164845-168795[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.039 53 3.9 0.2 16 43 41 65 27 66 0.77

2 11 0.098 1.3e+02 2.7 0.6 14 28 70 84 67 97 0.81

3 11 0.17 2.4e+02 1.9 0.2 18 31 103 116 100 122 0.84

4 11 0.00018 0.25 11.4 1.2 8 29 122 142 115 152 0.80

5 11 0.00042 0.58 10.2 0.1 18 40 158 177 145 180 0.89

6 11 0.17 2.4e+02 1.9 0.5 18 29 186 197 181 204 0.84

7 11 0.041 56 3.9 2.6 10 41 207 234 201 236 0.79

8 11 0.15 2.1e+02 2.1 2.7 4 29 229 253 226 263 0.75

9 11 0.005 6.9 6.8 0.5 6 44 259 293 254 293 0.84

10 11 0.0084 12 6.1 0.4 17 41 300 321 295 324 0.87

11 11 0.00054 0.74 9.9 4.6 12 43 323 351 313 352 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.039	53	3.9	0.2	16	43	41	65	27	66	0.77
2	11	0.098	1.3e+02	2.7	0.6	14	28	70	84	67	97	0.81
3	11	0.17	2.4e+02	1.9	0.2	18	31	103	116	100	122	0.84
4	11	0.00018	0.25	11.4	1.2	8	29	122	142	115	152	0.80
5	11	0.00042	0.58	10.2	0.1	18	40	158	177	145	180	0.89
6	11	0.17	2.4e+02	1.9	0.5	18	29	186	197	181	204	0.84
7	11	0.041	56	3.9	2.6	10	41	207	234	201	236	0.79
8	11	0.15	2.1e+02	2.1	2.7	4	29	229	253	226	263	0.75
9	11	0.005	6.9	6.8	0.5	6	44	259	293	254	293	0.84
10	11	0.0084	12	6.1	0.4	17	41	300	321	295	324	0.87
11	11	0.00054	0.74	9.9	4.6	12	43	323	351	313	352	0.83

Sequence Information

Coding Sequence: ATGGATGTCGCTATAGTATcggaagaacaaaaatctGATCAACCTAGTAAAGCTGACTCCAGCGATAACCAACGAGTAGAGAAGCATTATAAATACAGTCACGAAGACACTTCAGAAGATCCACAAAGTTGCGATGCGTGTGGCAAAGAATTAGGTAATCTAAAAGCTCTAAGAACTCACATTAAATTGAAACACGGCCGAAGTGATAGGCAAGGATTTCGTTGTCGCCTCTGCGAAGAGAAGTTCCACACGAAAGAGGACAGAAAGCTTCATTATGAGAAAATTCATTGCGGAGTGAGTCCATTCATATGCATGGATTGTGGAAAAGGATTCTCCAGTAAATCAGGATTATATGGTCATCGGCAACTTCACAAGAAAGACCAACAATCAACTTGCCAATATTGtggaaaaatctttaataGGCGGGATAGTTATCACGAACACGTTCTTATCCACGTGGGCCCTCGACATCGTTGTCCCTATTGTCCAAAAGAATTTGTACAGCGTAGCAATCTTATACGTCATATACGAATTCATACAGGACAGAAACCATATTCCTGCACCTTTTGTGAGAAACGTTTCTCGGACAAGGGTGCTTGTAACTCGCATATTCGGGTTCATACGAAGGAGGAGCAATGTGCCTGTCCATATTGTGGTCAAGTTTTCaccaagaaacaaaaattgaaatatcatatTCGCAAACACACTGGGGAAGGTTTATTGAGTTGTGAGATTTGTGCAAAAACTTTTACAAATACATTTGCCTTGAAGGAGCACAGAACCATTCACGATAGACAAACCCAATTGATGTGTATAGAATGTGGAAGAGCTTTCAGCAATCAGAAATACCTAGAAAGACACATGGCTACCGTGCATCCTGGTCCTGaatctttatctttcatttgtCCAATCTgtaataaagtttttcatcAACAGTCCAGACTGAAaTATCACATCGTAACGCATACCGAGAAGAAATTGTTAGAGTGTGAACTCTGTGGAAAACGATATAGCAGCAGAAAGTCTATGCAAAATCATTTACAACGCTATCATGATCTTCAAAGTAATAGAATTGAACGTAAAAGTCCTGTAAATAATACGCTCGACGAAGTGGAATTGAAGAGTACGGCAGTTATTGATTCAATATCAAAGAAAGATGGATCAGTTGCTGGAAAGTGCGAGCAGAATGAAATTATGACACTACTAGACGATTGTAAGAATATCAATTTTGCAAATGGCTCTTACGACGAGGATTTGAACGACATGGGGCCGCTCgcgaacaaaaaattctttacaaagaaagaagataaaagtttACTTGACGTCAATTCCGTACTGAACGAATGGATGAGTGCAgtgtacaaagaaaattttgcgTTAGTATCCACTGGGAATATCGATGAGGCGGAAGAACGTTGCCAAAATAAATGCGAAAAGGCCTTAAATTTAGTCAAGTTTGGTGCAACGTCTGCGGGTAGTAGTAAGGAGTTAGAAACTGGTACTTCTAAAGTACTGATAGCTCAAGATCAGTATTTACGAAACGACCAATGTCTATCTGATAATCAGAAAGTAATTGAGAATGAAGCGCTAACTTTGATACCGCAATCTGCTAATTTTGCCATTCTCAGAACAGTGAGAGTCGTTCATATCTTTCTCGGCATCCATATTGCTACTCTAGAATTGCTCATTAAAGCAGAAAAGCCACAAGCTCAAATACGAGGAAGGGTCAATCAATCTCAAAAGTTTCTAAATGACCGTATCGCTTGTGGAGTTTACAAAGGGGCGCAATTACTCTTTGTATTAAGTTGA
Protein Sequence: MDVAIVSEEQKSDQPSKADSSDNQRVEKHYKYSHEDTSEDPQSCDACGKELGNLKALRTHIKLKHGRSDRQGFRCRLCEEKFHTKEDRKLHYEKIHCGVSPFICMDCGKGFSSKSGLYGHRQLHKKDQQSTCQYCGKIFNRRDSYHEHVLIHVGPRHRCPYCPKEFVQRSNLIRHIRIHTGQKPYSCTFCEKRFSDKGACNSHIRVHTKEEQCACPYCGQVFTKKQKLKYHIRKHTGEGLLSCEICAKTFTNTFALKEHRTIHDRQTQLMCIECGRAFSNQKYLERHMATVHPGPESLSFICPICNKVFHQQSRLKYHIVTHTEKKLLECELCGKRYSSRKSMQNHLQRYHDLQSNRIERKSPVNNTLDEVELKSTAVIDSISKKDGSVAGKCEQNEIMTLLDDCKNINFANGSYDEDLNDMGPLANKKFFTKKEDKSLLDVNSVLNEWMSAVYKENFALVSTGNIDEAEERCQNKCEKALNLVKFGATSAGSSKELETGTSKVLIAQDQYLRNDQCLSDNQKVIENEALTLIPQSANFAILRTVRVVHIFLGIHIATLELLIKAEKPQAQIRGRVNQSQKFLNDRIACGVYKGAQLLFVLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01198856;
90% Identity: iTF_01198856; iTF_01199594; iTF_00770551;
80% Identity: iTF_00770551;