Hnig014003.1
Basic Information
- Insect
- Hartigia nigra
- Gene Symbol
- -
- Assembly
- GCA_031001745.1
- Location
- JARPRG010001491.1:458-1448[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0034 4.1 7.2 0.0 27 39 18 30 18 35 0.87 2 2 8.4e-06 0.01 15.6 0.0 11 33 60 83 59 93 0.88
Sequence Information
- Coding Sequence
- ATGTTAGCGTTGAGGCCGAAAGCAGATGTCGTTAAGCATTTTCTGAACGAAGGTATCCCGCGATCAACAATCTATTCAGTCATCAAACGATTCGAGCCTCACCTCATATTcgaaagaaaaccaaaaagtGGCCGTCCATCGAAATTCAATCGAGTTACCTTGCGAAAACTGAAGAAAGCTGTTGTTAACAAGACTGGTGTTTCACAAAATCAATTGGCACGTAAATTCAAGGTTTCTCAATCAACAATTTGTGCGAATTTGGCCAAGATGGGTGTGAAATATCGTAAACGAATCAAATCACCCAAATATACCAAGAAACAGCTCAATGAAATACCGAAAAAGTGCGAAGAACTcaagaagattttgaaaaggCGAACGAAAATGCTGGTTATCCATGATGAAAAGTACTTCACATTCTCCAACTCTTCTATCGCTGGAAACCGTGGTTTTTATACAGAAAACATTCAAAATACTCCAGAAGAAGTCAAATACGCTGGAAAAAAGAAGTTTGAAGAGAAAGTCCTTATTTGGATAGCCATTTCGAAGATTGGTTTCTCGGACCTTTTCATTACATCCACCAAGGGCTTTGCGGTCAATGCGGacaattatatgaaaaattgtctgccaaaagtgaaaaaattaatcaattcgGATCCCAAAAAGCACGTTTGGATCTTCTGGCCAGATCTTGCGAGTGCGCATTATGCCAAAAAATCCATTGAGTGGTTGGAGGCTGAAAACATCCGTTTCGTACCAAAGATATTGAATCCCCCCCAACGTTCCCGAAGCTCGTCCCATCGAAGACTTTTGGGAATCAGAATGAAGGTCAAGGAAGTCGATATGGCCTTAATCAATCGTATGGTGAACGGTGTTGAAGAGAAGCTCAGTAAAATCGCTGAAAATGGACCATTCGCtgttatttaa
- Protein Sequence
- MLALRPKADVVKHFLNEGIPRSTIYSVIKRFEPHLIFERKPKSGRPSKFNRVTLRKLKKAVVNKTGVSQNQLARKFKVSQSTICANLAKMGVKYRKRIKSPKYTKKQLNEIPKKCEELKKILKRRTKMLVIHDEKYFTFSNSSIAGNRGFYTENIQNTPEEVKYAGKKKFEEKVLIWIAISKIGFSDLFITSTKGFAVNADNYMKNCLPKVKKLINSDPKKHVWIFWPDLASAHYAKKSIEWLEAENIRFVPKILNPPQRSRSSSHRRLLGIRMKVKEVDMALINRMVNGVEEKLSKIAENGPFAVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01198591;
- 90% Identity
- iTF_01198591;
- 80% Identity
- iTF_01198591;