Basic Information

Insect: Harpegnathos saltator
Gene Symbol: Clamp
Assembly: GCA_003227715.1
Location: NW:36532-48203[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.1e-05 0.00073 19.3 2.5 1 23 170 192 170 192 0.98

2 8 0.00022 0.014 15.2 0.4 1 23 224 247 224 247 0.93

3 8 6.4e-05 0.0041 17.0 2.6 1 23 346 368 346 368 0.97

4 8 8.6e-06 0.00055 19.7 0.1 1 23 374 396 374 396 0.98

5 8 1.1e-06 6.7e-05 22.6 1.7 1 23 402 424 402 424 0.98

6 8 3.3e-07 2.1e-05 24.2 1.9 1 23 430 452 430 452 0.99

7 8 3.4e-06 0.00022 21.0 1.0 1 23 458 480 458 480 0.98

8 8 3.3e-05 0.0021 17.9 0.6 1 23 486 508 486 508 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.1e-05	0.00073	19.3	2.5	1	23	170	192	170	192	0.98
2	8	0.00022	0.014	15.2	0.4	1	23	224	247	224	247	0.93
3	8	6.4e-05	0.0041	17.0	2.6	1	23	346	368	346	368	0.97
4	8	8.6e-06	0.00055	19.7	0.1	1	23	374	396	374	396	0.98
5	8	1.1e-06	6.7e-05	22.6	1.7	1	23	402	424	402	424	0.98
6	8	3.3e-07	2.1e-05	24.2	1.9	1	23	430	452	430	452	0.99
7	8	3.4e-06	0.00022	21.0	1.0	1	23	458	480	458	480	0.98
8	8	3.3e-05	0.0021	17.9	0.6	1	23	486	508	486	508	0.97

Sequence Information

Coding Sequence: ATGGCCCTAGAATCAAATGGCAACAACGTGGTGTGGTTGAACGCAACCCGTCCTGATCAAATACAGCAGAGTCAACCAATTGAGCAGCCATTAAAGTGTTCCATGTTTACTCAAACGGAGCAATCTAATAGTTTTACTCAGACTGAGCAAAGCAATTCGAGTTACGCAGACCAGAGACAgCAGCAAGCAGCAATGTTTGACCCTCAACAAatccagcagcagcaggctGCACAGAGTCAGCAGTCGCAGCAGCAACAGTCTCAGCAGATATATGTAACGTCGGACAAGAAGGAGGACAAGtcccagcagcagcagtccGGCACGGCTGATGGTTTCCCTTCTTTCTACTACAACGTCAACATGCTACAAAAGGTTCAGACAAACGCGGTGAGCACAATCAGTGCGATCGCTGCCGACGACAAGGCTTGTTATCGTTTCGATGTGCAACCTGTCGGTTATAACACAATATTGAACCAGATGAGCATTGCCGCTGCTACCAATGCGACCTTCAAGTGTGACATTTGCGGGTTGGTCTTCGGCCACATGAGCCTGCTGACTCACCACAAACGGATTCACAACACGACACCCAGCAATCTGCAGCAGCCGCAGCAGCAGGTTGTGGTACAAACGCCGACAACAGTGACTGTCGCAACCACGCCGGACAGACCGTACACTTGTGACGTTTGTGGGGCGTGCTTTGCATTACCGGGAGAATTAAAAAGTCATAAAACAAACATGCATCAGAAACCTAAGATGCAAATTTGTGAAGATTGTGGCAGTGAGGACCCATGCGAACATCATCCaactaaaattaaaaagaCTATCAAACCTGGTCATCATCCAGTGAAACGGAGGGGTGTTACCAGTGTCACCAAGTGTCACAAGTGCAACGGCACgggaattatttttatagGTAAACACGACGAAAAAAATTCCGGAATCAATTCCCTCGCAAAGTGTGGCGGTTGCAAGGCTACAGGCCGCATCATCATAGGAAGCGGCAAGCAAAACAGTCAGAATCAAGCGGAGAAACCATTTCATTGTAACGTCTGTGACGGCACATTTTCTCGATATTCTTCACTCTGGTCCCATAAGAGACTTCATACGGGAGATAAACCATTCAAATGCGAAGTGTGTGGCTTAGCATTTGCAAAAGCTGCGTACTTGAAGAACCACGGACGAGTTCATACCGGTGAGAAGCCGTTCAAGTGCAATGTTTGTGGAATGCAATTTTCGCAAAGTCCGCACTTGAAAAATCACGAAAGAATCCATTCCGGTGAGCGACCATACCAGTGCGAGGTTTGCGAAAAAACATTCGCTAGACATTCGACGCTGTGGAATCATAGAAGAATTCACACCGGCGAGAAACCGTACAGGTGTAATATATGTGGTTCCGCCTTCAACCAGGCCACGCATCTTAAGAATCACGCGAAGGTCCATACCGGTGAAAAGCCGCACAGGTGTGATATATGTGAAATCGGCTTTTCCGATCGTTTTGCGTTGAAACGTCATCGTGCGATCCACGAAAAGTACGGTCAGACGGCGCGAAACCAAAACGCGAATAATCCGGCTAACGCACAACAGGCCAACGCGAGTagtcagcagcagcagcagcagcagcaacaacagccgCAGCAGACACAGCCAGGCCAGGTCGTGGTGGTGAATGCAGCCACTCCTGTCACCGTCAGCCAAGGGCAAGGTCAAGCAGTGATGCTCGAAGAGGTCTACAAGTGTCAGGTGGCCTTCCCAGAGCCTAAATGA
Protein Sequence: MALESNGNNVVWLNATRPDQIQQSQPIEQPLKCSMFTQTEQSNSFTQTEQSNSSYADQRQQQAAMFDPQQIQQQQAAQSQQSQQQQSQQIYVTSDKKEDKSQQQQSGTADGFPSFYYNVNMLQKVQTNAVSTISAIAADDKACYRFDVQPVGYNTILNQMSIAAATNATFKCDICGLVFGHMSLLTHHKRIHNTTPSNLQQPQQQVVVQTPTTVTVATTPDRPYTCDVCGACFALPGELKSHKTNMHQKPKMQICEDCGSEDPCEHHPTKIKKTIKPGHHPVKRRGVTSVTKCHKCNGTGIIFIGKHDEKNSGINSLAKCGGCKATGRIIIGSGKQNSQNQAEKPFHCNVCDGTFSRYSSLWSHKRLHTGDKPFKCEVCGLAFAKAAYLKNHGRVHTGEKPFKCNVCGMQFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCNICGSAFNQATHLKNHAKVHTGEKPHRCDICEIGFSDRFALKRHRAIHEKYGQTARNQNANNPANAQQANASSQQQQQQQQQQPQQTQPGQVVVVNAATPVTVSQGQGQAVMLEEVYKCQVAFPEPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00292456;
90% Identity: iTF_01087407;
80% Identity: -