Basic Information

Insect: Harpegnathos saltator
Gene Symbol: -
Assembly: GCA_003227715.1
Location: NW:292240-304543[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0079 0.5 10.4 1.0 1 23 329 352 329 352 0.96

2 10 3e-06 0.00019 21.1 0.7 1 23 358 380 358 380 0.99

3 10 1.1e-07 6.7e-06 25.7 0.3 1 23 386 408 386 408 0.99

4 10 0.014 0.93 9.5 2.4 1 23 414 436 414 436 0.98

5 10 2.6e-05 0.0017 18.2 2.7 1 21 442 462 442 465 0.95

6 10 0.0075 0.48 10.4 2.1 1 23 471 491 471 491 0.97

7 10 1.2e-06 7.4e-05 22.4 0.5 3 23 499 519 498 519 0.98

8 10 0.00012 0.0075 16.1 1.4 1 23 525 547 525 547 0.98

9 10 0.0011 0.071 13.1 3.4 1 21 553 573 553 576 0.96

10 10 0.016 0.99 9.4 2.5 3 23 584 605 582 605 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0079	0.5	10.4	1.0	1	23	329	352	329	352	0.96
2	10	3e-06	0.00019	21.1	0.7	1	23	358	380	358	380	0.99
3	10	1.1e-07	6.7e-06	25.7	0.3	1	23	386	408	386	408	0.99
4	10	0.014	0.93	9.5	2.4	1	23	414	436	414	436	0.98
5	10	2.6e-05	0.0017	18.2	2.7	1	21	442	462	442	465	0.95
6	10	0.0075	0.48	10.4	2.1	1	23	471	491	471	491	0.97
7	10	1.2e-06	7.4e-05	22.4	0.5	3	23	499	519	498	519	0.98
8	10	0.00012	0.0075	16.1	1.4	1	23	525	547	525	547	0.98
9	10	0.0011	0.071	13.1	3.4	1	21	553	573	553	576	0.96
10	10	0.016	0.99	9.4	2.5	3	23	584	605	582	605	0.96

Sequence Information

Coding Sequence: ATGCTCAGCATGGAGCAGACGGTCTTGGAACAAGTAGCCGGGCCTGAGCAGCCGCAAGAAGAGGTGCAGCTGACTGAATTGCTGCCGGTGAAGCGATCCCGCATCAGGGAGAGCGTCACGAAGGATGCCGACGCGACCGACGCCCTGAAAGCGCTCAGAAGCTTATCGAGCGACTGCAACGACAAGAGCGAAAACTTCGATTTCAATTTCTGCAAGAATGTCGAGAAACAATCGGAACATCAGAGCAGCAAGCAATGTATTCGATCATTTCAGAAGATACTTCGGAAGAGAACAAACGAGTCGAAAAAGATCATCGATAGTACTGACtcggatgatgacgatgaggaggaggaggacagaatggtgagaaagaaaacgaagaaaggACGTATCGACAGCAAGAACACTCGAGCGAAAAAGAATACCAAGAAGAAACAGACAAAGCCGAGCAAGAAGCAGATagaaggaaaaaggaggaggagtgACTACGGGACAAGTAGGAAAGCCCCTCGAATAAAGATTcccctcgacgacgacgagttcgAGAAGAACGACGAAAACGAGGGCTTGGTGAAGAAAGATTGCTTCAAGGACGTGGTTTACGTGTATAGACAAGAGTCACTGGATCCGTGCTTGAATTCTGCACTCGAGAAACCAGGACCAATCGATAAGAAGGGTCAGCAGCAGGTCCCCtgcaaaaaaaacaaaaacttGTCCGATAGGAAAAGCAGCATCGCTAATAATACCACTGCCAAGAAAGAGACGGGGAAAcccgagaaagagaagaaatctTCCGAGGAAGATACCGTCAACCAAGAGAATTACCTTCTGGAGAACAACAACGTCGTCAGTTCGAGTGGATCCAAGCCAACCTCTGATCCTGAGGACCCTGATGATCCATCCGCCAATCCGCCATCGGACACAGAGAAGAACAGCGACACCAATTCCCGAAGTCGGCAAGAAGTGCCGAACTGGCAGAAGAAGTACTGCTGCGTCGTGTGCTTCGCGCGCTTCAAGGGCAGCGGCGGTCTTCGTAACCACTACAAGGTGGTGCACAGCACCGGGCCGGTGTACAAATGCAACGAGTGCGGCAAAGAGTTCCCGCTGAAGGAACGGTTGAAGCTGCACGTGCGCACGCACACCGGCTTCAAGCCTTACAAGTGTCCGGAGTGTGACAAGAGCTTTGCACGGGGCGGCCAACTAGTGCAACACCGTCGCACCCACAGTCAGGTGAAGCCGTTCCGCTGTGTCCTTTGCTCCAACAGTTTCACGTGCGCGGCCAACCTGTCGCTGCACATGAAACGCCACAAGGGCCAAAGGGATCACAAGTGCGAGCTGTGCGGCCGCGCCTTCGTCCGCCGCGACGCCCTGAAGAAGCACCTCCAATGCCTGCACCGGGACGTCAAGTCTTTCATCTGCGTGATCTGCAACAAAACCTTCAAGGGTCACCTGCCGCAGCACATGAGGACACACGCGCACGATCGTCCGCACGGATGCGCCACATGCGGTCAGCGTTTCGCTCAGAAGTCCCAGCTGACCGTTCATCAGAGGACCCATACCGGCCAACGGCCATTCCGTTGCCTCGTCTGCTGGCAGGCTTTCGCTCATTCGACCGCCCTCAAGCTGCACACTCGCCGACACACCGGCGAACGTCCGTTCAAATGCACCGAGTGCAACGCCGGCTTCACTCAGCTACCGCACTGGAAGAAGCATATGAAATGCATACACGGTCGCACCAATCCGTACGGCTGCAGGTGGTGCAAGAACTATTTTAGGATTAAAAGCGACTTGGAGAATCACATCAAAACCTGTCACACCGAAGTGGAGGAAGAAGACTCAGACAttagcggcggcggtggcggtggcggtggcggaggCGGTGAaaacggcagcggcggcggtggcggcgatgcCGATGCATCAAAGCATGACAGCAAAGTCGCTAGCACGTCAAACGTCGTTGAGATCATCGAGAAACCTTCGGTCACCGTCAAGCAGAAACTGATGACGATTGAGAAGATGAGGCTACTACTGGCGGTGTTGTTGCAGAGAATCAGCAAAAAGGACAAGCTGAAAGAGCTCGGCTTCGGCAAGCGACTCATCGACGACGTCCTTCAGGACTCGCTGGTGTCCGCCGGTAAGGAGCCGGTCACGAACGACGGTCTGTCCGAGCTCGAGTCGCTCACTCGGAACTTGGAGATTTTCTTGGAATGGACGATGCCCAAGGAGTACTGGGAGAATTTCCGTAAGATGAACAAGTCGCCCGTGGACATTCTGGAGGCGCTTACTGACTGA
Protein Sequence: MLSMEQTVLEQVAGPEQPQEEVQLTELLPVKRSRIRESVTKDADATDALKALRSLSSDCNDKSENFDFNFCKNVEKQSEHQSSKQCIRSFQKILRKRTNESKKIIDSTDSDDDDEEEEDRMVRKKTKKGRIDSKNTRAKKNTKKKQTKPSKKQIEGKRRRSDYGTSRKAPRIKIPLDDDEFEKNDENEGLVKKDCFKDVVYVYRQESLDPCLNSALEKPGPIDKKGQQQVPCKKNKNLSDRKSSIANNTTAKKETGKPEKEKKSSEEDTVNQENYLLENNNVVSSSGSKPTSDPEDPDDPSANPPSDTEKNSDTNSRSRQEVPNWQKKYCCVVCFARFKGSGGLRNHYKVVHSTGPVYKCNECGKEFPLKERLKLHVRTHTGFKPYKCPECDKSFARGGQLVQHRRTHSQVKPFRCVLCSNSFTCAANLSLHMKRHKGQRDHKCELCGRAFVRRDALKKHLQCLHRDVKSFICVICNKTFKGHLPQHMRTHAHDRPHGCATCGQRFAQKSQLTVHQRTHTGQRPFRCLVCWQAFAHSTALKLHTRRHTGERPFKCTECNAGFTQLPHWKKHMKCIHGRTNPYGCRWCKNYFRIKSDLENHIKTCHTEVEEEDSDISGGGGGGGGGGGENGSGGGGGDADASKHDSKVASTSNVVEIIEKPSVTVKQKLMTIEKMRLLLAVLLQRISKKDKLKELGFGKRLIDDVLQDSLVSAGKEPVTNDGLSELESLTRNLEIFLEWTMPKEYWENFRKMNKSPVDILEALTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -