Basic Information

Insect: Harpegnathos saltator
Gene Symbol: -
Assembly: GCA_003227715.1
Location: NW:1789653-1792315[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.3e-05 0.00086 19.1 0.3 1 23 90 113 90 113 0.98

2 8 1.1e-05 0.0007 19.4 1.3 1 23 129 151 129 151 0.98

3 8 2.3e-05 0.0015 18.3 2.0 1 23 180 202 180 202 0.98

4 8 0.0033 0.21 11.6 3.2 1 23 210 232 210 232 0.98

5 8 3.3e-05 0.0021 17.8 0.4 1 23 281 303 281 303 0.97

6 8 2.4e-06 0.00016 21.4 1.1 2 23 309 330 308 330 0.97

7 8 2.2e-07 1.4e-05 24.7 0.7 1 23 336 358 336 358 0.95

8 8 0.00017 0.011 15.6 1.5 1 23 364 386 364 386 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.3e-05	0.00086	19.1	0.3	1	23	90	113	90	113	0.98
2	8	1.1e-05	0.0007	19.4	1.3	1	23	129	151	129	151	0.98
3	8	2.3e-05	0.0015	18.3	2.0	1	23	180	202	180	202	0.98
4	8	0.0033	0.21	11.6	3.2	1	23	210	232	210	232	0.98
5	8	3.3e-05	0.0021	17.8	0.4	1	23	281	303	281	303	0.97
6	8	2.4e-06	0.00016	21.4	1.1	2	23	309	330	308	330	0.97
7	8	2.2e-07	1.4e-05	24.7	0.7	1	23	336	358	336	358	0.95
8	8	0.00017	0.011	15.6	1.5	1	23	364	386	364	386	0.98

Sequence Information

Coding Sequence: ATGTCCTTGGGTTTTGTCGATTTCAGGGAAGCAGGCGAGACCTTTGGCGGATTGTCGGGGATGCTGCGCCAGATCCTCTCGCCCTCGCCCGAGACTGGGGAGGCTGGCATGTCCTCCGTCAATTGTAATCTTCTACAGACCAACTCCATATATACGAACCAATCGTCGATGCTATCGTCGACATTACTAAACACCATTCCTCCGCACTTTCAGTCCGTATGCCCGGATCAGTCCCTGCTCGACCAGATGCAGATCCTCGCGGAGTCCTATCCATGTCCCACCTGCGGCCTGGAGTTCCGAAGCGTCCTTAAACTGAACTATCACATGCGTACGAGCCATGTGATGCGTCCAGAGTATGAGCATAATGTCGAGAATCAACCGCGGTACTCGTGCGCTGTCTGCTCGCGTAGCTTCGTCTCTCTGAGTCACCTCAAGTTACACGAGCTCACACACACCACCGCGTCCGTGACCTCGTGCGCGTCGACCTCTGCGAACCTCATGTCGCCCGAcagcgATAACGGTAATATGGATAAAATGTTTTCCTGCGATCTCTGTCGAGCGACTTTTCGTTATCGTACGCTGCTGGAACGTCATCGAAGGATGCACGACATCGATCCGGAGAAAATGTACTCTTGCCCCAGGTGCCTGATGCGCTTCGAGACGCGTAATCTGTATAATCACCATGCGAAAACTCACAGACCAGTCCCGGCAACGGGTAACGACAACAACCGAATGATGGTCAGCGCGTCGAACACAGTAGTgccgtcgtccgtcgtcgacCCGGTCACCGCCGCCGTCAACCTCGGCGGCCCCATCATGCCCGCCAAATCCATGACCTCTTACCCCTGCGACTCGTGCTCCAAACAATTCACTACTGCCGAGTCGCTGACTACGCATAAGGCGGTGCACAGACCCAGACCGTTGGTGTGCAACGTCTGCGGCAAGGGCTTTACGCACCGCAAGTATTACGTGGTGCATCAGCGCATTCATACGGGCGAGAGGCCGTATCTCTGTGCCATGTGCGGCAAATCGTTCACGCAGGCATCGACGCTCACCGTGCACCGCCGTTATCACACGGGAGAGCGTCCGTACACGTGCACGTTTTGCGGGAAAGGATTCGTCACACGAACGATCATGCTTAATCACATGAAGAAGCATTGA
Protein Sequence: MSLGFVDFREAGETFGGLSGMLRQILSPSPETGEAGMSSVNCNLLQTNSIYTNQSSMLSSTLLNTIPPHFQSVCPDQSLLDQMQILAESYPCPTCGLEFRSVLKLNYHMRTSHVMRPEYEHNVENQPRYSCAVCSRSFVSLSHLKLHELTHTTASVTSCASTSANLMSPDSDNGNMDKMFSCDLCRATFRYRTLLERHRRMHDIDPEKMYSCPRCLMRFETRNLYNHHAKTHRPVPATGNDNNRMMVSASNTVVPSSVVDPVTAAVNLGGPIMPAKSMTSYPCDSCSKQFTTAESLTTHKAVHRPRPLVCNVCGKGFTHRKYYVVHQRIHTGERPYLCAMCGKSFTQASTLTVHRRYHTGERPYTCTFCGKGFVTRTIMLNHMKKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01099420;
90% Identity: -
80% Identity: -