Hsal004909.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Harpegnathos saltator
Gene Symbol
PRDM5
Assembly
GCA_003227715.1
Location
NW:2865160-2879027[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 7.4e-05 0.0047 16.8 0.2 1 23 656 678 656 678 0.98
2 16 0.017 1.1 9.4 0.7 1 19 684 702 684 704 0.91
3 16 0.00018 0.012 15.5 1.8 3 23 741 762 740 762 0.98
4 16 0.002 0.13 12.2 2.0 1 23 769 792 769 792 0.95
5 16 9.3e-05 0.0059 16.4 0.8 1 23 798 821 798 821 0.94
6 16 1.3 83 3.4 1.1 2 23 829 849 829 849 0.90
7 16 1.1e-07 6.7e-06 25.7 2.1 2 23 855 876 854 876 0.97
8 16 1.7e-06 0.00011 21.9 0.2 1 23 882 904 882 904 0.99
9 16 0.00048 0.03 14.2 2.6 2 23 916 938 915 938 0.95
10 16 0.006 0.38 10.8 2.5 1 23 944 967 944 967 0.96
11 16 0.0062 0.4 10.7 3.5 2 23 987 1009 986 1009 0.96
12 16 0.00029 0.018 14.9 0.4 2 23 1016 1038 1015 1038 0.96
13 16 0.00063 0.041 13.8 2.9 3 23 1047 1067 1047 1067 0.99
14 16 0.0016 0.1 12.5 2.3 1 23 1073 1096 1073 1096 0.96
15 16 0.37 24 5.1 5.2 2 23 1103 1124 1102 1124 0.96
16 16 0.0072 0.46 10.5 2.6 1 23 1130 1152 1130 1152 0.98

Sequence Information

Coding Sequence
ATGAGGATGTCAAACGACGAGGTGAACAAGCGTGACCACAACTATAGCGAGGCATTACTGTTGTCTCCACAACCACTGCTCTCATTGTCTTATTCTACTGATGATGGTGATTACAATAGCGGTGCTAACACCGTTGTCCGGGGGAAATACCGGCCAGCGCGAGAAATTGGTCAGATTAAGGATCTTGATGAACTGAAaaaaatcgcaccgcgcgtgCGCTTACGTGACACTCAAAGTCTGAACGAGTTAACGAAACTTTCTTTGAACACTAGTAACTCGCAGAGCAATACGTCAATTTCTGATAAGGCCAAGCAGGAGCTGAAAAAGTATTGCCGTACCTGTGCTGGTTTAAAACTGCCCTTGGTCGATATCTTTAGTGAGCGGGGCACCCAAATGCGATTGAGCCAACAAATGCGGCACTTGGAAATCATTTATCCGTGTGATAACTTGTCCACACAGATGTGCATGGACTGTATCTGCGACTTAAAAATGAGCTATAAGTTCTTTATGCAAATTAAAAAAGCACAAATCAAGCTGAAGTCAATTGCCAATCAGATAACGGATAGTGCAGTAGTTTCGAAAAAACCGATTGATCCTGAACTGATACAGCCTCCTATTGAGATGAGAGAAGATAAGACAGAATCAAGATCAGCCGAGAATCCCTCTGTAGCCGAGAAAAATTTCCTTACACCATCAACCATAGAAGAAGATCAACCTTCTTCCGCAACACATTCTCAAAAAGATGAAGAACCTGTTCCGGTTATTTTTTCGCTACAGGATAACACAAAGGAGTCAACGGTGGAACAGAGCGTCGGAATTTTCGAGGAAGTAGTGGAGATAGATGATGAAGACGATGAAGACTCCATCGAGGAGTTCGATCCGGAAGATCCGGATTTCCAAGAACAGGAGGAACAGGGCAAGGAAGGACAGCAGGAAGAATCGCCGGCCGTCTATAAATACGATATGGCGCGGAAGTCGTACGTACGACTGGAAGGAGCTGCTGAGGAAGTAACGACCGCTGTTACTCAGGTAATGCCTACCTGCATCGAGGCAGAAGAAGAGAGTCCAAAAGAGGCAGGGCAGCCGAACATACTGAAGAAAAGGCTACTAATGCCGTCGAGAACAAGTACGGAGGGAGAATCAGGAAGTAGCGGGGGAGAGTCGGCGCCAAAAGTGCAGAAATTggatttaaacaatttttttagcGCGAACAACGCTCCCGAGGAGGACGGAGTTATGTACGTGACTGTGAAAGGTTCCAAGCCGAACGAGATACTCCTTGTGAAAGTGAAAAAGATGGACAAACAGGCAGAGCGTACATCCGCTGAAAGCAAATCTGTTGAACGTTTTTTTAAACGTTACGAGACACTATTAAAGGATTATTCGCGAAAACCGGATGCTCGCGAGCAAATAATCGAGGAACAAATTGAAGAATACAAGCGGAAACGTGAGAAGGTTCTCGGCGATCAATCGGCAATGATCTTCTCTCTAAACGAAAACCGAAAGGAATTACAAAAAGAtagttcttcttcttcgaaatcAAGTCCTGTCAAGGTAGacgaaataattattaaggaCATAGAGGAGGAAGAACACGAGATGATGGACATAGAAGAGATAAAGATAGAAATGGACGTCATCGAGGAGCAGGTCAAACCGAAGACGCCGAAAGTGCAACTGGAAGAAACATATAGGAAGAAGGAGAGTCTACAAAAAGAGCCGGAGCAGTCCTGCAAGGAAGCGGATTTGGAAAGATTGGCGAAAATCTTGGGCGAAGACAACGAGCATTTACAGGATTTCCAGGAGTATTTGAAGCAGCGCAAGATCATCATCACGCGCCTCAAGAACGAGGATATCATTTCTCTGTATGAGGATCGTCACAACAGCGTTCTCAGGCCACGTGAGAGTCTCCCCGACCTCATCGACGCTTCTCTCCCGGCTGATTCTCTTGCTGAGGAATGTTACTTCGAGTGTGATTATTGCCCGGAGACGTTTTCCAGTCGTGAAATTCTTGAGGAGCATCTCAAGACTCATGATTATCGTATCATGCATTTCTGCGAGGATTGTGGCGAGGAATTCACAACCAACAAGGCCAAAAGAAACCACAACATAGCCTGCCTGAAGAAATTGATTTGCAAATACTGCGACACGCTGATGGATACTCGAGGGAGGAAGCGTCGACATGAACAGAAACATGTGGATAGTCTGTATGGCCAGCTTTGTGAAGTTTGTGGTGAACGATTCAAGCACCAAGGTACTTTGGACCAGCACCGGAAGACTCAGCATACAATCTTGGAGAAGATCTATCAGTGTCCTAAGTGCCCGAAGAAGTTCGCCTTCAAACAGAAACTCAGTTTTCACTTAAAGTCAGTGCATACGACTTTAAGGGCTTTTTTATGCGAAGATTGCGGCGCAGATTTCAAAAATCCAGCTAGCCTGAGGCACCACCGAATCCGGAAGCACCAGCCAGTGGGTAACAAGCGCGAGTGTCCAGTCTGCAGGAAGCTAGTGCCATTTTATAGTTTGTCAAAGCATATGCATACCCACAAAGCTTATAGTATTCAATGCCCGCATTGTGACAAAATGTTCAAGAACAGCTCGACGTTGAAGCAACACGTGAGAATTCACGAGGATCAGAGACAATATCGTTGCGACACGTGCGGAGTAGGATTTAACAGAAGAGACGGACTCAGGCTGCACATGAGGGTACACCAGAAGACAGACAGCCGGGGGCTGAAGGAATGCTCCTGTCAAGTTTGCGGAGAAAAGTTCCCGAATCACTCGACTTTGGTGATCCATCGAAATAGGGAGCACAAGGATGGCAGACAATATACATGTCATATCTGCAACAGATCGATGATATCGACCAGGTCCCTAGAGTGGCACATGTCGCATATTCATAATGAAACCATGCCAGGTATTGTTCGTGACGATAATATGCCTGAGAAGAAACGGGTCTCCTGTTATCACTGTAACAAGACATTTAAGACGGAAATGATCCTACGTACGCATATCAAAAAAACACACATGGAGAAGGACCCGATGAAGTGTCCCGATTGCGGAGATGCGTTCACGTCGGAaGTGCGCTTACGTCATCATATGATGGTAACGCACAATCGCCTGGAAGGCACCTTGGGATGTCCGCATTGCTCTAAACGATTTGTCAACCAATTGAGGTTGAAGACGCACATGATCTCGCATTCAGAGGAAAGACCCTATACGTGCGAAGTATGCGGTTTCAATCTGAAGACGAAGATCCAACTGATCAAACACCATCAGAACCGGCACAGCGACGAGCGGCCGCTAAAGTGCAGTCATTGTCCATGGCGGTGCAAACAAGTCAGCGCGTTGGTGTGTCACGAGCGTACGCACACCAACGAGCGGCCTTACTCGTGCAGCGTGTGTCGACAGCGTTTCAAGTACCTCGGTGACAAGAATAAGCACGAACGTCGTCACGAGAGTCTTGGCGGAACTGGCTTCAAGCGCATCGTTCCCGGAAGAAATTCCAAGTCGAAGTCGCGCGACGAACAGTCCTCAGCGTCCGAGCAGGAGGTGGAATTCAAGAACACAGGTGCAATTAAAGCGGGCTCGGCGTCAGCTGCTGAAGAGCAATTTGAGATGCAGCAGGATGAGCCATTCAGGGGCAAGTTTAATAAGGACGAGCAACTTGTGGAGTTTGAGGAACAACATATAGTGAAGTTTGAAGAAAACATTTCGGAAGATTACGAGCAGGTGTATGAACAGGAATATGAGGAAACGTCGAGGGAGGCTTCGGAGGCTACCGAGGTGATCATGAACATGGAGGATCCTGGTGTGTATACGGAAGAAGTGACTGCCGATAATATAGAGGCCGATATGATAACCGAGGATGAAATAATAACAGGTGACATCCTGCACACGTCGGCTGCCGGCGGCACCACCGCTGCCGTCGTGCATTTGCAGCAGCAGGACGACACCGGCAAGATCCAAGTGATACCGGTTATGCTGTCGTTGCCTGATCTCTCTGACGCCAACGCTGAGGTCAACCTTGCCACCGCGTCCATCATGTACAACAATTAA
Protein Sequence
MRMSNDEVNKRDHNYSEALLLSPQPLLSLSYSTDDGDYNSGANTVVRGKYRPAREIGQIKDLDELKKIAPRVRLRDTQSLNELTKLSLNTSNSQSNTSISDKAKQELKKYCRTCAGLKLPLVDIFSERGTQMRLSQQMRHLEIIYPCDNLSTQMCMDCICDLKMSYKFFMQIKKAQIKLKSIANQITDSAVVSKKPIDPELIQPPIEMREDKTESRSAENPSVAEKNFLTPSTIEEDQPSSATHSQKDEEPVPVIFSLQDNTKESTVEQSVGIFEEVVEIDDEDDEDSIEEFDPEDPDFQEQEEQGKEGQQEESPAVYKYDMARKSYVRLEGAAEEVTTAVTQVMPTCIEAEEESPKEAGQPNILKKRLLMPSRTSTEGESGSSGGESAPKVQKLDLNNFFSANNAPEEDGVMYVTVKGSKPNEILLVKVKKMDKQAERTSAESKSVERFFKRYETLLKDYSRKPDAREQIIEEQIEEYKRKREKVLGDQSAMIFSLNENRKELQKDSSSSSKSSPVKVDEIIIKDIEEEEHEMMDIEEIKIEMDVIEEQVKPKTPKVQLEETYRKKESLQKEPEQSCKEADLERLAKILGEDNEHLQDFQEYLKQRKIIITRLKNEDIISLYEDRHNSVLRPRESLPDLIDASLPADSLAEECYFECDYCPETFSSREILEEHLKTHDYRIMHFCEDCGEEFTTNKAKRNHNIACLKKLICKYCDTLMDTRGRKRRHEQKHVDSLYGQLCEVCGERFKHQGTLDQHRKTQHTILEKIYQCPKCPKKFAFKQKLSFHLKSVHTTLRAFLCEDCGADFKNPASLRHHRIRKHQPVGNKRECPVCRKLVPFYSLSKHMHTHKAYSIQCPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHQKTDSRGLKECSCQVCGEKFPNHSTLVIHRNREHKDGRQYTCHICNRSMISTRSLEWHMSHIHNETMPGIVRDDNMPEKKRVSCYHCNKTFKTEMILRTHIKKTHMEKDPMKCPDCGDAFTSEVRLRHHMMVTHNRLEGTLGCPHCSKRFVNQLRLKTHMISHSEERPYTCEVCGFNLKTKIQLIKHHQNRHSDERPLKCSHCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGTGFKRIVPGRNSKSKSRDEQSSASEQEVEFKNTGAIKAGSASAAEEQFEMQQDEPFRGKFNKDEQLVEFEEQHIVKFEENISEDYEQVYEQEYEETSREASEATEVIMNMEDPGVYTEEVTADNIEADMITEDEIITGDILHTSAAGGTTAAVVHLQQQDDTGKIQVIPVMLSLPDLSDANAEVNLATASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01087388;
90% Identity
-
80% Identity
-