Hsal007314.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Harpegnathos saltator
Gene Symbol
-
Assembly
GCA_003227715.1
Location
NW:385253-390233[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.014 0.92 9.6 0.2 3 21 8 27 6 28 0.85
2 14 1.1 69 3.6 0.0 2 20 34 52 33 54 0.91
3 14 0.79 51 4.1 0.4 1 12 239 250 239 259 0.89
4 14 0.002 0.13 12.3 3.6 1 23 373 395 373 395 0.97
5 14 1.3e-05 0.00083 19.1 1.2 2 23 399 420 399 420 0.98
6 14 0.0013 0.085 12.8 5.6 1 23 431 453 431 453 0.97
7 14 0.12 7.8 6.6 0.2 1 23 472 493 472 493 0.80
8 14 0.0012 0.077 12.9 0.0 2 23 499 520 498 520 0.95
9 14 4e-05 0.0025 17.6 4.8 1 23 584 606 584 606 0.99
10 14 1.7e-06 0.00011 21.9 3.7 1 23 612 634 612 634 0.96
11 14 4.2e-05 0.0027 17.5 5.5 1 23 640 662 640 662 0.99
12 14 1.2e-06 7.7e-05 22.4 0.8 1 23 668 690 668 690 0.98
13 14 0.00012 0.0077 16.1 0.3 1 23 694 716 694 716 0.99
14 14 0.00038 0.025 14.5 0.7 1 23 724 746 724 746 0.98

Sequence Information

Coding Sequence
ATGGGCTCACTAAACCTTGTTTGCCCAATGTGTTGCGGTGAAACCTTTAATAATCCTCAATCGTTGAAATATCACTTGTTAAGTATAACGGACAATCTTTATTGCCCTGGCTGTTCGCAGCGTTCTGATTCTGTGGTTGCACTCATCCAACATTTAGACAAATGTCAGCAAGGTTTGCAGCGCAAAATAAAATCTGAAGTTTTGATGGATAAAGCTCGAAAAGTCAGCAAAGAGTCAGAAAATAAAGGAAATATCCTAGCGGATATTAAAGTACAGCAGATCAATCGAAGCTTTTTAGCGACTGTGAATGATACTGGAATTGTAATAGTTGGTGATCCGCAAACAATACAAGTGGATGAGAATGgaGAGATTAAAGTTGTAGAAAAGCTGGACTTGGATGAAATACAACCAGGTCAAAACTCCCTGGATTTCAAGATGTCTGAAAGTTTTTGTGGTATTAGTGGTGAAAAACAAAGAAGACCACAATCATCTCAGGGATTAGTGGCTATTCCTATATCGAGCTGTATTGCAGAACGTAAAGAAGCATCATTAGACAAGAGTGTGATTGCTGTATTATCAGAAAATTCTGAGCTTGTGGATGGTGACATTACAACCTTCATTGATGTTGATCATATAAATGACATGGGAGAGTTGAATGAAGCTGATCTTCTACGTGTTAAACAAGAATTGTGTGAGATGGAATCAGATGCTGTATATAGCTGTACCAGCTGTGACATGAGTTTTAATTCTGTCTTGGAACACATTAAGCAATTTCATGATGGTCAAGAAGTTCTATTAGAAATGGCAGAACAATTGGATGATCTGGCGACGACAGTACCCGTAAGTTCGATGTCTACGTTACCTGAAAGTTCAGAAAATATGGATAATACACGGCAAAGACAAACTATGAATACACTACGCACAGAAGAGTGCATTGATAGCGAAGGTAGGCTGTATACTAGGAAAGTAGTACAAATTGAGAGATTTTGGGACCGAACGCCGATTCAGGTTGCGACGTCGCAATCATCGAAGGCTCCAATGATTGAGAAATTCTTCTCAAATGTTGAAGGCATTAAGGTACGGGAAAAACGCCTGGCGGCTGCACCATTGCGAATGTACAAATGCAATCAATGTTCGCAACAGTTTTCCAAATTAGGAAACTTTCGTGTACATGCCTGTTTACATGGTAACAATCGCTGCGACCATTGCGATCAAAGCTTTGCAACCCCTAAGGCCTTACAACTCCATACAAAGGTACATGAAAATCGAGTCGATTCCGGGCAGAAAACATTTATTTGTACAACGTGTGGCACTGAATTCTGCTCTCATAAAAGCTTGCGACTGCATTCAAGAATGCATGCTCCTATAAGGGCCAGGCATGTTGACGCACCCGAAGGAACCCCTACGGCGACTTTTACTTGCCTCGAATGCGgTAAGACTTTATCTGAATCATACAAAGACGCGCACATGGCGCTGCACACAGGTGATTCAGTAACGTGTGCTGTCTGTAACAGAAAATTTGATTCCTCGGACAGTTTAGCGATGCACGCAGCAGTACATACTGATCTAGTGCCCCCACAATCACCTACTCCATGTGTTTCGATTTCAACCTCAACTGCTGAAGAGATAGTACCAATCGCAGAGACAACGTTAACAACAGCGACAACTACAATGACAGTTACAACAATAACAACTACAACAGCGACGAGTGCGATAGCGACGATGGAGACTAGTGAAAGTCAAAAACCTTATCAATGTCAGCACTGTGGTCGTAGATTTACTAGACCTCATGAAAAGGTCAAGCATGAACGAATTCACACTGGAGAGAAGCCACACGCCTGTGAGGTCTGTGGCAAGACTTTCCGCGTATCCTATTGCCTGACTTTACATATGCGTACGCACACGGGTGTGCGACCTTATACATGTCAACACTGTGGTAAACGTTTCAAGGCTTCCTCCGTTTATAATCATCATATGCTGACGCATGGTGACACACGTGCTTATACGTGTCCGTACTGCCCAAAGACATTCAAGACACGTGTGCAACTCGCTGGTCACAAGAATAGTCACACTAAACCGTTTCGATGTACCGAGTGCTCGCGACCATTCGCGTCGCTCTATGCTGCCCGGTCGCATATTCAGACGCATAAAAAAGATAACAACCTCAAATATAGTTGTTATATATGTGGCGCATCGTATGGTCGAGCATTTGCTCTTAAAGATCATTTGAAGCACCATGGTCAGGATGTCCTAGCGCCACCAGAGCCAGCGCGGGAAGAAGTGCATGAGGGTTTCTTCTTCGGTGAGGATATACTCGAGGGTGATAAGCGCATACGTGATCGCCTTGGAGTTCCATCGTCTACGCTCGCTATTAAACCTACTTCTATGGACGACGCTGTTTGA
Protein Sequence
MGSLNLVCPMCCGETFNNPQSLKYHLLSITDNLYCPGCSQRSDSVVALIQHLDKCQQGLQRKIKSEVLMDKARKVSKESENKGNILADIKVQQINRSFLATVNDTGIVIVGDPQTIQVDENGEIKVVEKLDLDEIQPGQNSLDFKMSESFCGISGEKQRRPQSSQGLVAIPISSCIAERKEASLDKSVIAVLSENSELVDGDITTFIDVDHINDMGELNEADLLRVKQELCEMESDAVYSCTSCDMSFNSVLEHIKQFHDGQEVLLEMAEQLDDLATTVPVSSMSTLPESSENMDNTRQRQTMNTLRTEECIDSEGRLYTRKVVQIERFWDRTPIQVATSQSSKAPMIEKFFSNVEGIKVREKRLAAAPLRMYKCNQCSQQFSKLGNFRVHACLHGNNRCDHCDQSFATPKALQLHTKVHENRVDSGQKTFICTTCGTEFCSHKSLRLHSRMHAPIRARHVDAPEGTPTATFTCLECGKTLSESYKDAHMALHTGDSVTCAVCNRKFDSSDSLAMHAAVHTDLVPPQSPTPCVSISTSTAEEIVPIAETTLTTATTTMTVTTITTTTATSAIATMETSESQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYTCQHCGKRFKASSVYNHHMLTHGDTRAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARSHIQTHKKDNNLKYSCYICGASYGRAFALKDHLKHHGQDVLAPPEPAREEVHEGFFFGEDILEGDKRIRDRLGVPSSTLAIKPTSMDDAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00452727;
90% Identity
-
80% Identity
-