Hsal005921.1
Basic Information
- Insect
- Harpegnathos saltator
- Gene Symbol
- -
- Assembly
- GCA_003227715.1
- Location
- NW:621247-625227[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.17 11 6.2 0.2 2 22 120 139 119 139 0.92 2 14 0.00017 0.011 15.6 1.3 2 20 146 164 145 167 0.94 3 14 0.0004 0.025 14.5 2.1 1 23 173 196 173 196 0.94 4 14 1e-05 0.00067 19.4 1.5 1 23 202 224 202 224 0.98 5 14 0.00066 0.042 13.8 0.4 1 23 384 406 384 407 0.95 6 14 0.0029 0.18 11.8 0.3 2 21 417 436 416 437 0.93 7 14 0.00018 0.012 15.5 2.7 1 20 459 478 459 481 0.92 8 14 0.00033 0.021 14.7 0.7 1 23 486 509 486 509 0.95 9 14 2.7e-06 0.00017 21.3 0.9 1 23 515 537 515 537 0.98 10 14 0.00036 0.023 14.6 2.2 1 23 544 566 544 566 0.99 11 14 0.00015 0.0095 15.8 0.7 3 23 574 594 572 594 0.97 12 14 0.00035 0.022 14.6 0.2 1 23 600 623 600 623 0.96 13 14 0.12 7.7 6.7 0.4 1 23 637 659 637 659 0.96 14 14 8.3e-05 0.0053 16.6 0.0 3 23 906 926 904 926 0.98
Sequence Information
- Coding Sequence
- ATGGAGACGCACGAGAACGAGCAGTTCGTGACGTTTCCTCTCGCTGACGTGCACGATGCCATACAGGAGAACATGATATCTCATGAAGAAATATGCGAGCCCAGCGTCGACGATTGCGTCCTCCAAGAAGACCTTGTGGAGGTCTCAGTGGGCAATGTCAGTGCCGACTTAACGGAGCCACAAAGCGAGATACTTGCAGAGCAGTCAGATGCAGAAGATGACAATCAAGTTGTGTATCCAATGTATATCAAACAAGAGGAACAACAGCAGTACACATCAGGTGACGACGAGTCCATGGCAGTGGAGGCCCTACGTCAATTGGGTGGTATGTATCCCTGCTTCGAGAACAAGAAGATCAGCTGCCCCACATGTAAGAATCTCTTCAATCAGGATGAGTTAGCCAAGCATCAATCTACATGCACTACTCCTAAGTTATCCTGCACTACTTGCGGTGAGAGCttcgagagaaagatagatCTGAACAACCATATGGTCTGTCATCAGGTGGATCGTCCTCATGCATGTAGAACATGTGGCAATTTGTTCCGTTCTAAGAGTAGCTTACAGTCACACATGCAGCAGGTGCACCAGGCTGAGCGACTGCACAAGTGCACGATTTGTGGCTCTGACTTCCAAAGACCCTCCAGCCTGTCTAATCACATGAAGATACATACCTACATCGCGGGACGCGCGGTCATGCAGTCGCAAAGTAGCAACATGTCACAGTCTGCTCAAGAATCATTCCGGAAGTGGCCAGACACGGACACGTCCGATTCGCAGAACGCTTCCCAGGTGCCGACGGTGCATTCTGTACAGAATTACGATGTGTGTCAAGTACAGTGGCCGGTGTCGTACAATTTTCAGGGCGAGCAGTCGACTGTCACCACGATGGCGAATCACCAGGAGAAGATAGACGCGCTGCAGGAGTTCACGGTGATGTCTAACGGCGAGGTGGCGCAGTTCGAGTACACGGAACAGAACAGCATCGGCAACGCGGTCAGCGGTCAGCAATACAATCTGACGTTGAACTCGTTTGACGGCCACGACCGGGTGGTGAAGGTCGAGACACTCTCGACCTACGACGATAACAGAAGGAACTACGTGGAGATCGAGACGAACAACGGCAAGCAGCAACCACAACAGCAGCAGTACATATGCAAACACTGTGGTGTTGTGTTGGCACGTGCGACAGCATTAGCGTCTCACGAGAAGATCCACCATACTACCAAGAACTGGAATATGCCGATCGAGTGCGAATACTGTGACAAGCAGTTCCAAGACGGCAATCACCTGGCGACTCACCAGACTACCTGCGCCAAGAAGATCATGCGGAACAACCTCGAACAAGGTGTGGCCAATAACAAGTGGGGAAAGCACGCTTGCTCCGATTGCGGCAAGAAGTTCACGACGAAACAGAAGATGTTCCGCCACCAATGGATCCATAGGAAGAAGACGCATTCGTGCGAGGTATGCGGCACGCAGTTCGAGAAGCAGTCCCAGCTGGACGAGCACCGGCTGTCGGCGCATCCCGCCGACACGCCGCACACTTGCACGGAGTGCGGCAAGAGTTTCGTGTCTCGTCAAGGTCTCTGGGAGCATGGGAGAACTCACGTAGGTAGCCCGGCGCATTTTCAATGTGACAAATGCTTGAAGACGTTCTCCTCCCGCCAGGGATATCTGATACACAACCGCACGCACACGGGTGAACGGCCATACGGCTGCAAGTTTTGCTGGAAGTCCTTTCGGGACGGCGGGACTCTTAGAAAACATGAGCGGATCCACACTGGCGAGAGGCCGCACGTGTGCCCGTTATGCTCACGGGCGTTCAACCAGAAGGTAGTGCTTCGTGAGCACGTGCGCTGGGTGCATGCAGCGGGTAAGAACGAGACCGAGGATCTCGAGCCGCCGTTTAGCTGCACGCTGTGCGGCGTCATGAATCAGGACCGCGACGAGCTCTGCGCACACATTGTCAAGCATTCCGATCAGATGATAGCCGAGGCCAAGGCGAAGTGTGTCAACCACCCGAAGCCAAAGTTGCCCAGGAAGAAGACTAGGACCAAAGccaagtcgtcgtcgtcttcgtcgacgtcgtcgcgtgTTAAGACGCCGAACAAGCGTGATCCATTGAACCACTTCATCTCGAAGACGGAGCAAAATGAAGCCTTGCAATCAATCACGGACAACGCGGACAAATCGAGCGATCTGCATGTGATGAACGAGAAGCCGGAGAACGCTTTCGTCGTAGTAACTACGGAAAAGCGCAATGACGGCTTCATCGCGATATCCGAATTTAAGCATAGCAACATACGGTTCATAGTGGAGGGCAAGCAGGACGACAACATCCACGTGCTCCACGTGGATCAGAATCACCGGGGATCCCTCAACGTGATCGCCACGCCGGAGTGCAGCGATGCGACGCAGTCGGTGATGTCGGTGGAAGAGCCCGCGAGTGGTGTACTTGATGAGGCAATTGGACGTGACGACATGACGGCGATGCACCTCATCCAGACGTCTCCCAGTGGACAGAACACCCTGAACATAATATCGAAGCAGAACGAGTCGTTGCCGGTTCTGGCGATACCGAATCCAGAGAGCCACAGCGATTACTCCAGCCAAATCGTGCAGGACGAGCAGAATCGCTTGATGCAGGATGAAGCCTCGCAGACGGACATTCAGCTCGAGGAGTACCAGAGTGACGACGTTGGTGACTTTGGCTGCGAGATCTGTGGAGAGGAGTTCGACGAGAAAGACGCGCTGAAGGAACACATCAAGATTCACATATAA
- Protein Sequence
- METHENEQFVTFPLADVHDAIQENMISHEEICEPSVDDCVLQEDLVEVSVGNVSADLTEPQSEILAEQSDAEDDNQVVYPMYIKQEEQQQYTSGDDESMAVEALRQLGGMYPCFENKKISCPTCKNLFNQDELAKHQSTCTTPKLSCTTCGESFERKIDLNNHMVCHQVDRPHACRTCGNLFRSKSSLQSHMQQVHQAERLHKCTICGSDFQRPSSLSNHMKIHTYIAGRAVMQSQSSNMSQSAQESFRKWPDTDTSDSQNASQVPTVHSVQNYDVCQVQWPVSYNFQGEQSTVTTMANHQEKIDALQEFTVMSNGEVAQFEYTEQNSIGNAVSGQQYNLTLNSFDGHDRVVKVETLSTYDDNRRNYVEIETNNGKQQPQQQQYICKHCGVVLARATALASHEKIHHTTKNWNMPIECEYCDKQFQDGNHLATHQTTCAKKIMRNNLEQGVANNKWGKHACSDCGKKFTTKQKMFRHQWIHRKKTHSCEVCGTQFEKQSQLDEHRLSAHPADTPHTCTECGKSFVSRQGLWEHGRTHVGSPAHFQCDKCLKTFSSRQGYLIHNRTHTGERPYGCKFCWKSFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEDLEPPFSCTLCGVMNQDRDELCAHIVKHSDQMIAEAKAKCVNHPKPKLPRKKTRTKAKSSSSSSTSSRVKTPNKRDPLNHFISKTEQNEALQSITDNADKSSDLHVMNEKPENAFVVVTTEKRNDGFIAISEFKHSNIRFIVEGKQDDNIHVLHVDQNHRGSLNVIATPECSDATQSVMSVEEPASGVLDEAIGRDDMTAMHLIQTSPSGQNTLNIISKQNESLPVLAIPNPESHSDYSSQIVQDEQNRLMQDEASQTDIQLEEYQSDDVGDFGCEICGEEFDEKDALKEHIKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -