Hsal001489.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Harpegnathos saltator
Gene Symbol
-
Assembly
GCA_003227715.1
Location
NW:300824-313858[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.075 4.8 7.3 4.5 3 23 372 393 372 393 0.97
2 14 0.00016 0.01 15.7 2.1 1 23 399 421 399 421 0.98
3 14 8.2e-06 0.00053 19.8 2.7 1 23 427 449 427 449 0.96
4 14 0.00038 0.024 14.5 6.4 1 23 458 480 458 480 0.96
5 14 6.4e-06 0.00041 20.1 2.4 1 23 486 508 486 508 0.98
6 14 7.3e-07 4.7e-05 23.1 0.5 1 23 513 535 513 535 0.98
7 14 0.11 6.8 6.8 6.3 1 23 542 564 542 564 0.98
8 14 8e-05 0.0051 16.7 1.1 2 23 584 605 583 605 0.96
9 14 6.3e-05 0.004 17.0 0.6 2 23 613 635 612 635 0.95
10 14 0.0019 0.12 12.3 0.6 1 23 641 663 641 663 0.98
11 14 3.9e-06 0.00025 20.8 1.9 1 23 669 691 669 691 0.99
12 14 2.3e-05 0.0014 18.4 1.6 1 23 697 719 697 719 0.97
13 14 7.5e-07 4.8e-05 23.0 1.9 1 23 725 747 725 747 0.98
14 14 6.7e-06 0.00043 20.0 0.3 2 23 753 774 752 774 0.96

Sequence Information

Coding Sequence
ATGAAAGTTGTTTGTGCAGCGTCAAGttgtaaatattcttcaaaAACTGAAGATTCATCGAATGTCACTTTTATCTACTTTCCTGAGGACGACACGGCCAAAACATGGGCGAAAAAGTGTGGCAGATTGGATTTAGTCAAAAAATCGAATATGGAATTGCACTTCAACTACAGTATTTGTTCTCATCATATAGAAGATTGTTATTATATGAGTAAAACTCccattataataaaacaagGTGCTATTCCTACTCTATTTGGGACCGATTCATACACTGATAATAAAGATTCTAGAAATGTATTTGATAAGCTGCAAACTCTTCAAGAAGCAAGCGACAATGTATCTCTAACATATTGCAACATGAATGCAGAAATAAGTAAATATCATGATGCCAACTTTTCCAATTTATGTAGAATGTGTGGCAAGTTGACTCTGAATGGAGTAGATATTTTTTCAGCTGAAGGTACAGAGCTTAAGctaaaagaaaagataaactTGCACGTGCCTATTTCAATTCTCATGGATGATGCAATGCCACGGAAAGTTTGCATTGAATGTTGTAATGAATTAGACAAGAGACATTTGTTCATtgtcttatatttaaaaactAATATAGAGttaatgaaatttttaaacATTGAGAATAAGATGGAATATGAAAATAAGTATAATTCATTATTGAAAAAGTATttgttagagaaaaatgaagaaatatgTGTGAATAATAGTATGCATTATGATTCTGCATCATTTACTACGAATAAGATTACAAATTCTGGTTTAGAAACAGATTTAGAAGAGTTAGAAAATGAAGAATGTTCTGAAACTGAACAGCCTGATAGGAAAGATAATATTCCTAAACatgcaattatatataatgcattacaaaataaaaacgaCAAGAATGTGGCAGTTAACAATGGATTAGAAACAGGAAATTCTCAAATAGTcaataaaaaatgtgaaaacAAACAACTTACTGATAAACCTGAGGTCTGTGAGTCAGTGCAACCAGTAAATTATCAAGTTTCCAGTCAACTATCCAAGACTCAACAGAATTTTGACAAATGCGAGTCTTTGCATGAAAATGCTACAACAGGAGTTAAGAAAGGATGTGGTCATTGTGAAGGAactttttttagtaaaaaagATTTATTACATCACATTAAGCAATTTCACAAAGGACAACTATTATTTCGATGTTGCACATGTAATAAGACTTATGAAAGATGGTCCAGTTTAGACATTCATGAAGCTACTCACAGATTAGACAAGCCATATCTTTGCGATTTATGTGGGAAGAGTTTTAAACATTCCAACTACTTAAGAGGTCATAGAAGAATTCATTTGGAGGAatctaaaaagaaaaaacatatttGTGAATTCTGTAAAAAAGCATTTAGATCACGATTTCATTTAAAAGAGCATCAAAATCAACACATAGACAATAGACCATATACTTGTGAGTTGTGTGGGAAAGCGTTTTACAGGAGGATTCAACTACGACAACACCATTTGTCGCACGGatcaaataaatattcgtGTCCAATTTGCGGCTTGACGTTTAATCGCAAAGGGAATATGAATATGCACGTGAAACGACATAACAACGGGAGTGGAGCATATACATGCAGTGTCTGTGCTTGCAAGTGTAAGTCCATGAGCGAATTGAAGATGCACAGAAAGAACCATACTGAAGAAGAAATAGTGGACAGTATTAAGAGGAAGTCTAACGACAAGGAAATATGGCGATGTAACGTTTGCAACAAAGTGTTCTCAAAACGCATTTATTTGGTGGCTCATGAACACACGCACGGAAACAATCAGATTTACGTGGAGTGCAAAGAATGCGGCAAAAAGTTGGCGAGCAAGAGCTCGCTAAAGTATCATGAGAAGTCTATGCATCTAAAGGAAAAATTATACATGTGTCAGTATTGCGGAGAATCCTTAGTCTCAAAAGAGACGCAACTGAACCATGAAAGGAAACACACTGGCGAACGTCCCTACGTTTGTAAAGTGTGCAATGCACATTATATATCTTCGAGTAATCTGAGCCAGCACATGAAAACCCATACAGGCCTAAAGCCACATGAATGTGGCTATTGCGGCAAAAGATTTTTACGTAAAGATTCGCTAAAAGTACACGAGAGAATCCACACTGGCGTCAAACCGTATCCTTGCGAAATCTGCGGCAGATGCTTTTCGCAGAAGAATGACATGTTGAAGCACGTCAAGACGCACAACGGTAAATCGTTGCAGTGCGACCAATGTGACGAAGTTTTTAGACAGAAGAAAGACCTGTTGAAGCATGCTGCGACACATGagcaaaatatttcagcgatTCTAAGTGACGTTGACACGCAATCGGATATTATGCAACCTTGCTGA
Protein Sequence
MKVVCAASSCKYSSKTEDSSNVTFIYFPEDDTAKTWAKKCGRLDLVKKSNMELHFNYSICSHHIEDCYYMSKTPIIIKQGAIPTLFGTDSYTDNKDSRNVFDKLQTLQEASDNVSLTYCNMNAEISKYHDANFSNLCRMCGKLTLNGVDIFSAEGTELKLKEKINLHVPISILMDDAMPRKVCIECCNELDKRHLFIVLYLKTNIELMKFLNIENKMEYENKYNSLLKKYLLEKNEEICVNNSMHYDSASFTTNKITNSGLETDLEELENEECSETEQPDRKDNIPKHAIIYNALQNKNDKNVAVNNGLETGNSQIVNKKCENKQLTDKPEVCESVQPVNYQVSSQLSKTQQNFDKCESLHENATTGVKKGCGHCEGTFFSKKDLLHHIKQFHKGQLLFRCCTCNKTYERWSSLDIHEATHRLDKPYLCDLCGKSFKHSNYLRGHRRIHLEESKKKKHICEFCKKAFRSRFHLKEHQNQHIDNRPYTCELCGKAFYRRIQLRQHHLSHGSNKYSCPICGLTFNRKGNMNMHVKRHNNGSGAYTCSVCACKCKSMSELKMHRKNHTEEEIVDSIKRKSNDKEIWRCNVCNKVFSKRIYLVAHEHTHGNNQIYVECKECGKKLASKSSLKYHEKSMHLKEKLYMCQYCGESLVSKETQLNHERKHTGERPYVCKVCNAHYISSSNLSQHMKTHTGLKPHECGYCGKRFLRKDSLKVHERIHTGVKPYPCEICGRCFSQKNDMLKHVKTHNGKSLQCDQCDEVFRQKKDLLKHAATHEQNISAILSDVDTQSDIMQPC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-