Hsal003491.1
Basic Information
- Insect
- Harpegnathos saltator
- Gene Symbol
- -
- Assembly
- GCA_003227715.1
- Location
- NW:629909-655876[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.4e-13 2.8e-10 39.2 0.0 1 39 523 562 523 566 0.90 2 4 2.8e-12 3.4e-09 35.7 0.1 2 39 578 615 577 618 0.94 3 4 1e-18 1.2e-15 56.3 0.0 2 45 633 677 632 677 0.97 4 4 8.1e-19 9.7e-16 56.7 0.1 1 42 684 726 684 728 0.96
Sequence Information
- Coding Sequence
- ATGCCGTGCGTCCTCAGCACGGAGCGCCGAATGCCATTTCACTTTCGTTGGGCTTCGCCGCGTAGGAGATCGGGCCCTGCCAGGAATTATCCTCTCGTTCGGCGCGCTCGTAACCTCCccgtgcgcgcgtatttcGGCCAGCTTTCTCGCGGCTGCGtcgtccgcgacgacgacgaccaccaCGGACACGACAacggtcgcgacgacgacgacgaggacgtggACGAGGACGGTCGCGTCGGTGACCACGACGGCGATCGCCGCGACACGTTTTCTCGCAGTGACTTCCCGACGACTTCTGCCTCCACCTCCgcgtcctcctccccctcatccgtcgccgtcgccgcctcctctttctcttcttcttcttcttcttcttcttcctcttcctcttccttcacTCTCCGCcgctcttccttttcctcgtTCTCTGTCTACTGCTTCCCGtcacttcctcctcctcttcctcctcttcctcctcctcctcctccacctcctcctcttccttctcctccacctctcgCAGCtgctgctactactactactactactacttcTATTTCTCCAACTACTACTGCTgctcattttcttctttcgccgtgtcctccacctccacctccacctcctcttCTGTCTCGACGAGGGGACCGTTCACCCACGGAACGCCGCAGCCAGTCACTTTTGAAGACGGCCGACCAGCTGAAGATCAAGGGTCTCTGCGAGGTGCCGGAGAGCCGAGACGGCCCGCCGTCCGTGAGCCTGAGCTCGCCACCGAGGGAGTCCGGCACCCCGAGATTGAACTACACGAAGCTGAAGAAGCACCATCCGCGGTACAAGCGGCCGAGAACCACGTTCGAGCCACGCGCCACCGACCCGAGACATTACGAGCGCTATAAAGAGGAGGAGGTCAACGAAGATTACAGCCGCAATAATAAAGAGAACCATCGGGACTGGCCAGCCGAAGATGAAGAGTGCGCGGAGGCACCAACAGCAGCAGTAGTGTTGGACACTTGCCAgcgcaacaataacaacaacaataacaacaacaacaacaacaacgAGGAAGGGTGTCCGGGTTCGATCAGAAAGCATCTGTATGAATCGCTCGTTTCGGACCGCCGTCTTCCGTTCGAAAACTCTACTGGCTATTTTCGATGTAGAGGGCTAGGTCACTATGGCCATCATCCGGACCCGGGAGAAGTCGATCTACCCCCTGAGACGCAGCCCACTCCGCCCAGCGCTACTTTAGTCGGCACCACCATCACCCACCTGAGAGATCCGGATCATCACTCTACAGAGATTCAGAATTGCGACAGCGTCAAGATAAAATTCGAGACGTTACACACGATGGACTCATCGGACACGATTGACATAGACAGCCACATGTCGGATCGGGCGAGCGTCAGCTCGAAGAATGCCGCCGACAACGACAACATGATAATGATTACGCCGGAGCTGCTCGGGCTGATGCCGTCGGGCAGTTCCGTGCACTCGGACTCTGGCGAGAATAATTCGAGGGGCCACTCCGGACAGTCGAGCTCGCATCATCACGGCTCCAAGTCGTGGACGCAGGAGGACATGGACGCAGCGCTGGAAGCCTTGAGGAACCACGACATGAGCCTGACGAAAGCCTCTTCAACATTTGGAATTCCGTCGACGACACTGTGGCAACGGGCGCATCGACTGGGCATCGACACACCGAAGAAAGACGGTCCCACAAAGTCCTGGAGCGACGAGAGCCTGAACAACGCTTTAGAAGCCCTACGCACCGGTACTATCTCGGCTAATAAAGCGTCCAAGGCGTTCGGCATACCCTCCAGCACGTTGTACAAGATCGCCAGGAGAGAAGGCATCAGACTGGCCGCGCCGTTCAATGCGAGTCCCACGACGTGGTCGCCCGCCGACCTGGATCGCGCCCTAGAGGCGATCAGATCCGGCCAGACATCCGTGCAAAGGGCATCCACCGAATTCGGCATACCGACCGGTACGCTGTACGGACGATGTAAGCGGGAGGGAATCGAGCTCAGCAGAAGTAACCCCACACCGTGGAGCGAAGACGCGATGACTGAGGCTCTCGAGGCCGTCAGATTAGGTCACATGAGCATCAATCAAGCAGCAATCCACTACAACCTGCCGTATTCCTCGCTATACGGACGCTTCAAGAGGGGGAAGTACGAGGAGTCGGTGGTCGGTGAGATTTCACAGGACGGCAGCAGTCCGCATTTTCATCAGAGTCCCAACCAGAATCACTCGTCCGCCCTTCCGGATCAAATGCCTTATCCGGGCAGCTGA
- Protein Sequence
- MPCVLSTERRMPFHFRWASPRRRSGPARNYPLVRRARNLPVRAYFGQLSRGCVVRDDDDHHGHDNGRDDDDEDVDEDGRVGDHDGDRRDTFSRSDFPTTSASTSASSSPSSVAVAASSFSSSSSSSSSSSSSFTLRRSSFSSFSVYCFPSLPPPLPPLPPPPPPPPPLPSPPPLAAAATTTTTTTSISPTTTAAHFLLSPCPPPPPPPPLLSRRGDRSPTERRSQSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPRESGTPRLNYTKLKKHHPRYKRPRTTFEPRATDPRHYERYKEEEVNEDYSRNNKENHRDWPAEDEECAEAPTAAVVLDTCQRNNNNNNNNNNNNNEEGCPGSIRKHLYESLVSDRRLPFENSTGYFRCRGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADNDNMIMITPELLGLMPSGSSVHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASSTFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEESVVGEISQDGSSPHFHQSPNQNHSSALPDQMPYPGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -