Hruf027784.1
Basic Information
- Insect
- Harpalus rufipes
- Gene Symbol
- stc
- Assembly
- GCA_951394225.1
- Location
- OX596280.1:15855218-15880577[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2 6.8e+04 -4.3 1.6 15 19 482 486 481 486 0.81 2 15 6.2e-06 0.21 13.5 16.5 3 18 531 546 517 547 0.87 3 15 7.5e-07 0.025 16.4 9.3 1 19 583 601 583 601 0.97 4 15 0.44 1.5e+04 -2.0 1.4 6 10 631 635 630 635 0.90 5 15 2.8e-10 9.4e-06 27.4 12.1 1 18 641 658 641 659 0.98 6 15 1.4e-05 0.47 12.4 12.8 4 19 707 722 700 722 0.88 7 15 2 6.8e+04 -4.8 3.7 1 10 731 740 731 740 0.82 8 15 1.5 5e+04 -3.7 2.0 5 10 751 756 751 756 0.93 9 15 0.0018 62 5.6 10.7 1 11 762 772 762 784 0.91 10 15 2.7e-10 9.2e-06 27.4 11.8 1 19 789 807 789 807 0.98 11 15 2 6.8e+04 -4.2 0.8 6 10 836 840 835 841 0.81 12 15 2 6.8e+04 -6.7 13.2 9 19 853 864 843 864 0.71 13 15 0.34 1.2e+04 -1.7 1.2 8 13 869 874 868 875 0.84 14 15 2.7e-07 0.0092 17.8 12.8 1 16 900 915 900 925 0.87 15 15 0.11 3.6e+03 -0.0 17.9 1 19 932 951 932 951 0.95
Sequence Information
- Coding Sequence
- ATGGCCCAGTGGAACCCGTATTACGGTGTTCCAAATCAATCTGATTCTGTGTACGAAGAACAGAATTtaagttctcaaaattattatggAATGCAATCAGCTCCATATGGTTCAGTATCAATGCAACCTTATAATGGGTATTATATTCCAAACAATGTTTACTCCAACTACGGTTCACATATGACGGGAAATGTGTATAATGTTCAAGAACTTGAAGCGCAACAATTTGCCTCTTATAATCAAAATACAAACATCTCCAATTCCGGTACAAATGATGTTGCATCATCTTCTAACAATCAAATGAAACACAATAAAAGTGATAGCAGAGAAAATGCAGGTGTGTCTAATGATACTCCTCCCAATTCAACATTACATGCTACAGCAGCCGAATTTAAGCCTAGTTCATCCGTTTCGACTAATTCACAAATAAGTAGTCAAACTTTTTATCGAAATAGCCAAAAAAATAAAGTTGATAATCGAAATAGTAAAGGAGCAATCCGCAAAAGTAAAGACGAATCTAAAATTAGTAGAAATGATGCAGAGGCTCCGATTAATGATGAACTAGTAAGAACAGAAACTAAACCTAATAATCAAAGATATAGTAGAAATAATTTAGGGCagaactataataataaatcataCAAAGATCGCAATAActatagtaataaaaattataatagaagGGAAGAATATTCCAACAATGAAGTAGAAAATAATCAACGTTACAGCGAACAAAATAATTCCAGGTATGAAAGCAGGAACAGTAGATATGAAAATAGAGAATCAGAAAATAGAAGTAACAGATATGATAAAGATTCAGAAACCCGAAATCATAGATATGAAAATAGAGAACAAGAAAACAGTTACAACAGGCATGAAAATAGGGAAAATAATTATGGAAGAAATTACAGAAGACCCGAATACAACCGAGAAAACAATGAATCTTCTTCAAGAGTAAACAACTACCGTCAAAATCGTTCTTCCCGAGAAGAAAACTACAATAGAAATTACCGCGAATATCCTGAAAGAAACAGCGAACGAAATTCTTTTCCCCGCGacagttataataaattcaACGCAAAGCCTTCATACCGAAACAACCGGTATGAAAATAGAGGTTATGAAAATTGGCGCACTGGTCCAAGTGGCGAGCAAGataagaaaaatgaaaacaagggAAAAACAGAAAAAGATGAAAAAAGTAGATATGAAGTCGATAGAAAAGTTTATCGAAATGATCATAGAGTTGGAAAAGATGATGATAAATCGCAAAGAGACCGCCTAACAGATCAAGTAAATAAAGGAACGTTAGAATGTTTGGTGTGTTGTGATCGAGTAAGACAGCAGGATAAGATTTGGTATTGCCAGATGTGTTaccatatctttcattttcgttgtattattaaatggGGAAATACTTCAAAAGACGATAATGGTTGGCGCTGCCCCGCATGTCAACATGTTTCATCCGAAATTCCTTCCTCTTGTGTCTGTTACTGTGGCAAAGTCAACGATCCTCCTTACAACCCTGGCGATACAGCTCATAGTTGTGGTGACGAATGTGGCCGATTAGGAGTTAAACCTGGCTGTATTCACCGCTGTAACTTACTGTGCCACCCAGGCCCATGTCCAAAATGTGAAGCTCTCGTTTCTAAACATTGTAACTGTGGAGCGACGACGCAAATGGTGAAATGTAGCGCTGATGCTGTGTTAGTATGTACGGCTATTTGTAGTAAAGAATTAAAATGTGGAGTGCATAAATGCGATAAGATTTGTCATAGGGATGATTGTGAAGAATGCACGGAAACTATTGATCAAGaatgcTACTGTGGAAAATCCAGTAAAACAATTCCTTGTAGCAAAGACCAGATTGACATAAAATATTACAGTTGTGAACAAGTGTgtgataaattattaagttgTGGCAACCATAAATGTAACGATATTTGTCATCCTGGTGATTGTGCACCATGTGTACGAGCACCAGAACAAGTTAAAACTTGTCCATGCGGTAAATCTAAACTTGAAGTTGTAAGAACTTCATGCCTTGATTCTATTCCTTGCTGTGGAAAGatatgtGGTAAACGGTACCCCCTTTGTGGCACTTCTTCCAATCCGCATGTTTGCAAATCCGAATGCCACGAGGGCGAATGCCCAAGTTGTCCTCTCACCAGCTTCGTCCGTTGTCGGTGCGGTCACATGAATTGCGAGTTAACTTGTGCGGAGCTTGTCTCTCGCACTGACGATGCTCGTTGCGAGAAGAAATGCACTAAAAAGCGCTCTTGTGGTCGTCATAAATGCAATCAGCTGTGTTGCATTGACATTGATCACATTTGTCCGCTACCTTGCAATCACATGTTAACATGCGGTTTGCACCGATGTGAAGAAACTTGTCACAAAGGCCGATGTAAGCCGTGCTGGAGAATCAGTTTCGATGAGTTATACTGCGAGTGTGGCTCGGCGGTGATATACCCGCCAGTACCTTGTGGAACGAAAAGGCCGCATTGTACCAAGCCGTGCACTAGACAACATGAATGTGAACATGAGCCACTACATCAGTGTCACAGTCAACCAGAATGTCCACCTTGCACGGTTTTAACTACGAAATTGTGTCATGGAGGGCATGAGaaacGCACAACAATTCCATGCCATCAAAAAGATTTCTCCTGCGGTTTGCCATGTGGCAAAGAGCTTCCTTGTGGACGACACAAATGCCAATTACCTTGTCATAAAGGTTCCTGTTTGAAGGAAGGACAAAGTTGTACACAACCTTGCACGGTTGTTAGAGAAGACTGCGGCCATCCTTGTAATTTACCATGCCACGAACCACCTTGTCACGATTCTCCATGCAAAGAATCTGTTAAAGTAACCTGCCAGTGTGGTTTAAGGTCATCGACAAGAGTTTGCGTTGACATGACAGGAGAGTATCAAAGAATTGCGACGTCGATGCTAGCATCCAAAATGGCTGATATGCAGCTGGGGCATTCGATTGATATAGCTGATATTGTGGGTACAAATGCGAGAAAGCAGACTCTCAAAACTTTGGAATGCAATGACGAATGCCGATTGGTAGAAAGAAATCGTCGCCTTGCAATAGGACTTCAAATTCGAAATCCTGATTTGAGTGCAAAATTAACTCCTCGTTATTCAGATTTTATGCGTCAGTGGACAAAAAAAGATACTGTTTTTTGCCAAATGGTTCATGACAAACTTACAGAGCTTGTTCAACTTGCTAAGcagTCAAAACAAAAATCTCGTAGTTTTTCATTCCCGTCTATGAACCGAGAAAAAAGGCAATTTATTCATGAATACTGCGAACATTTCGGTTGCGAAAGCGCTGCATATGATCAAGAACCTAATCGGAATGTTGTTGCGACAGCTGCTAGAGATAAGGCATGGTTGCCAAGTTGCAGTCTTCTTGAATTGATCCAACGTGAAAGCGGTCTGCGCAAAGTGCCTGGACCGATTCTGAATCGTCCCTTGGGTGTCTCCAAAACATCGGACACGGTTGAAATCATACGATACGAACGGCGACGGCCGCCGTTGGAGTATTTCTATTATTGA
- Protein Sequence
- MAQWNPYYGVPNQSDSVYEEQNLSSQNYYGMQSAPYGSVSMQPYNGYYIPNNVYSNYGSHMTGNVYNVQELEAQQFASYNQNTNISNSGTNDVASSSNNQMKHNKSDSRENAGVSNDTPPNSTLHATAAEFKPSSSVSTNSQISSQTFYRNSQKNKVDNRNSKGAIRKSKDESKISRNDAEAPINDELVRTETKPNNQRYSRNNLGQNYNNKSYKDRNNYSNKNYNRREEYSNNEVENNQRYSEQNNSRYESRNSRYENRESENRSNRYDKDSETRNHRYENREQENSYNRHENRENNYGRNYRRPEYNRENNESSSRVNNYRQNRSSREENYNRNYREYPERNSERNSFPRDSYNKFNAKPSYRNNRYENRGYENWRTGPSGEQDKKNENKGKTEKDEKSRYEVDRKVYRNDHRVGKDDDKSQRDRLTDQVNKGTLECLVCCDRVRQQDKIWYCQMCYHIFHFRCIIKWGNTSKDDNGWRCPACQHVSSEIPSSCVCYCGKVNDPPYNPGDTAHSCGDECGRLGVKPGCIHRCNLLCHPGPCPKCEALVSKHCNCGATTQMVKCSADAVLVCTAICSKELKCGVHKCDKICHRDDCEECTETIDQECYCGKSSKTIPCSKDQIDIKYYSCEQVCDKLLSCGNHKCNDICHPGDCAPCVRAPEQVKTCPCGKSKLEVVRTSCLDSIPCCGKICGKRYPLCGTSSNPHVCKSECHEGECPSCPLTSFVRCRCGHMNCELTCAELVSRTDDARCEKKCTKKRSCGRHKCNQLCCIDIDHICPLPCNHMLTCGLHRCEETCHKGRCKPCWRISFDELYCECGSAVIYPPVPCGTKRPHCTKPCTRQHECEHEPLHQCHSQPECPPCTVLTTKLCHGGHEKRTTIPCHQKDFSCGLPCGKELPCGRHKCQLPCHKGSCLKEGQSCTQPCTVVREDCGHPCNLPCHEPPCHDSPCKESVKVTCQCGLRSSTRVCVDMTGEYQRIATSMLASKMADMQLGHSIDIADIVGTNARKQTLKTLECNDECRLVERNRRLAIGLQIRNPDLSAKLTPRYSDFMRQWTKKDTVFCQMVHDKLTELVQLAKQSKQKSRSFSFPSMNREKRQFIHEYCEHFGCESAAYDQEPNRNVVATAARDKAWLPSCSLLELIQRESGLRKVPGPILNRPLGVSKTSDTVEIIRYERRRPPLEYFYY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -