Hruf023488.1
Basic Information
- Insect
- Harpalus rufipes
- Gene Symbol
- -
- Assembly
- GCA_951394225.1
- Location
- OX596278.1:55321072-55324413[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.012 2.7 10.4 4.6 2 23 159 181 159 181 0.91 2 10 0.0024 0.53 12.7 0.9 3 23 247 268 245 268 0.93 3 10 7.4 1.6e+03 1.7 7.6 3 23 358 379 357 379 0.95 4 10 0.18 38 6.8 0.1 2 23 439 461 439 461 0.91 5 10 0.00021 0.045 16.0 1.9 2 23 525 547 524 547 0.97 6 10 0.0096 2.1 10.8 3.6 2 23 644 666 643 666 0.96 7 10 0.094 21 7.7 4.2 2 23 680 702 679 702 0.92 8 10 0.00058 0.13 14.6 0.4 2 23 775 797 775 797 0.93 9 10 1.6 3.5e+02 3.8 1.7 1 23 871 893 871 893 0.97 10 10 0.00024 0.053 15.8 1.9 2 23 930 952 929 952 0.95
Sequence Information
- Coding Sequence
- ATGATGAGCTCGGCAGGGGCTGCGGTGCAGGCCGTGTACGCGTCGCCGGCACCGGCACCGGCGCCGTCCCCGTGCCCAGGCGCAGACCCGGACGACGACCTCTCGCACCGCAAGCGTCCCTTCCCCGCAGCAGCCAGCACGGACACCTGCAAGAAGCGCCGCAAGCAAGCCACCCCCATCCGTATATCCAGCACCGCCCCAGACCTCTGCCTCGAAGGTAAGGATAAGGAGCACCAGCTACCGCCGCTGCCGCCCGACTCCGAACCCCACACCATCAAGGTGGAGCACAGTCCTAGTCCCAGCCCCATTCCCGTCAACCTCTCCGGGGGGCAGAACTTCCCGCCCTGGCTGTCCGACGTGCAGTCCACCTCTGCCTCTAACTCCCTACCCTCACACAATTTCTATGTTCCGGTGGCTGTCAGCCGCGCGCCCTCTACTCAACAACCCCCCATCCGCATTTTCAACCCGGAGGCCTACTGCGAGTTGTGcaacaaagaattttgtaacaaatattttctgaaaacgCACAAAGCTAACAAACACAGAATATACACCGATCCGCCGTGCTCAGATGCTGTCAACCTCACGCCAGTTAATGTTCCTTCCTACACGGCTAGCGTACCTATGCCTGTTCCCGTGGCCATGCCTATGCTCATGCCTGTCATCAAGAAACCAACAATGGCTGAAACACCAACTCCCACTCTCAAGAACATTACCACAGATTTCATGGCGCACTTGTGCGATTTATGCGCGAAGACCTTTCCCAGCAAAATGCTTTTGAAGGCGCATCGGATGAATGTGCATGGTATATCCGACCCAGACGTAGACATCGAACCGCTACCTTTGCCTTTAGACACCACGCAGATCAAAGAAGAACGTGATCGCGAACCAGAAGTTACCGACATCCCAGACAAAGACACAATGCTATACAAAGACGATTCACTCGTTATGGATCAAGAAGAAAATTCGGAAAACATCGCGCCGCTAAATTCTCAACAACAAAACAGAGAAAACATAGATTTCGCCATGAACCGCTCTCGTCGCCTAGGGATTATGAATCCAGAAGCATTTTGCGAAATATGCTGTAAAGaatattgtaacaaatatttcCTCCGTACACATAAAATGAAACGACATGGGATATTAATTCCAGACGAAAATTCCAAAGATAATCAGAAAGATTTCAAATTAGAATTATCAATTAGTAATAATTGGTACCAAATACAAACAAGTCCGTTGAATTTAATAATGGGAGAACAAAACACAAACAGTTCCGGGTCTTGTGAAAGAAAATCGTCTCCAGCAAACGAAAACGAATGTGAAATATGCGGCATGCGATTTCAAACGATGTATCTCGCTCAACTTCACTTTGCCACGGCTCATGGTCCATCTCAGGTACTAAAAACTAGCGCCACTGACGAATTCAGTACCGTACTTTCTGCCAATAACAACGATAAACAAGTCCCGGACTCTATCAGCGAAGATTTACAAAAACTACAAACTATGATTCTTCAGCTGAACGACTTAGATGTTAGTAAAGTAGCCGCAGGGAACAGTACAACTACTCTATCAACATGTACAATGTGCAGTAAAGAGTTCGAAAATAGGTATTATTTACACGCCCACCTCATGACGGAACACGGACTGTTGTTAGAAAACAACTCACATCTATCGCATATAGACATGGACAATACTACAGAAATTACTTCAGAAATGCAACAAAATACTGACAATCAATTAAAAATTCTCCCTATGCCTTCTTCGGGTACTATGGACAAAAAAGACGATTCTAATGGTTTTATGGGCCCGGAAAAATCAATGAGGACACTCAACACAAATGGAAACACTTCGAATTCTAACAGTAACAGCAATGCAGTAGCGGTAGGTTCAGAAAGAAGATCTTCTGTTACTATGACACCGGCCAACAGTTACTGCGAAATTTGTAATAAAGAAttatgtaacaaatattttatgaagaCACATATGCAACGCATGCATGGCATCGAAATAGAAAATGGCGCGCAAATTGGAGGTGTTGTTTGTAATATCTGCAACAAAGAActttgcagtaaatattttctTCGGGTACATAAACACAACACGCATGGCATCGTACAAGACAATTTAGGCAGCAGTAGTAGTACCAGTAGCACCCAACGACAAACAAATCCAGAATTAGACCAGGGAACATTACCAGCAACCACCCAACCAATTACAGGGACTACTGACATCTCAATACCGACCAGCGGTACCGCCGATTCGTCTTTAAAACTCGGCGATTTGTCAGATTTAAGTAATCGATATTTTACTCATTTCACCGAAGTTTGTACCATTTGCAGTCGACGATTCCGCAGTACCAAATGGTTGAAGGCGCATTTGCTTGGAGATCACGGAAAAGCTGGTACCGAAAAATGGAACGAATTAGAAATGCAACTTCAACAATCTTTTACGCAACAACAACAATTGCAGTCACGAAAAAATATCACTGAAAGAAGCAGTCCTACGTTGCGAATACCAAATGGTGGACATGGGCAAGATATAAAAGCTGATACAGGGATGCATAATGTACTATCGAGTATATTTGGTACAGATGAATCAACCGTTAAACAATATCATTGTTCCTTTTGTTCTTTTTCGACACCAGTTTTGGCGTTTTTGTTTGTTCATGAGCGATCTCATTCGCATCCACAATCACATTCTACAACCAATACTAATGGTGGAAATACACCTGTTAATACAAACACCAATACTAGTACAAATATAGTCCCTAGTGCGATGTCGCCTTTGTATTGCGCTGTTTGTAACCAAACATTCCGTCAACCTGAGCAACTACACCACCATATTGTAACGCAACATACATTCCTTTCGTTTTTTGGTAATGTACGACAACCAACGCCAACTCCAACACCCACGCCGGCATTACCAAAGCCGGAAGAACAGGAACAAAAACAACCAGAAGATCACAAATGTTTTTCGTGCAGTACTTGTGGACGTCTGAATAAATTAGAAGTGAGCACAGACATCAGCATTACTTTGCAGGACGTTTCGAAACAGAGGCAGCTTCCTGCTTCGTACGCACTTCCTCAATCTCAATCGCAATTGAAAGCTAAATATACCATGCAGGCTTTTTTGATGGATGAACCAAGTACGGATACAAGTGAGGCATTAAGCGCAGGGTCAGGAACAGTGTTATTAACAAACAAGGAAGCCAATGGAGACGAGGAAAGGGAGCAAACAGAGGCTCCGCCTGATAGAAGATTCGCACCATCTATTGTCTTCCTGCCCGTCCTAGAAAAGCTCACGTCTCCTTTGACAGTGTCGTTCACACTTACTCCTGCCTAG
- Protein Sequence
- MMSSAGAAVQAVYASPAPAPAPSPCPGADPDDDLSHRKRPFPAAASTDTCKKRRKQATPIRISSTAPDLCLEGKDKEHQLPPLPPDSEPHTIKVEHSPSPSPIPVNLSGGQNFPPWLSDVQSTSASNSLPSHNFYVPVAVSRAPSTQQPPIRIFNPEAYCELCNKEFCNKYFLKTHKANKHRIYTDPPCSDAVNLTPVNVPSYTASVPMPVPVAMPMLMPVIKKPTMAETPTPTLKNITTDFMAHLCDLCAKTFPSKMLLKAHRMNVHGISDPDVDIEPLPLPLDTTQIKEERDREPEVTDIPDKDTMLYKDDSLVMDQEENSENIAPLNSQQQNRENIDFAMNRSRRLGIMNPEAFCEICCKEYCNKYFLRTHKMKRHGILIPDENSKDNQKDFKLELSISNNWYQIQTSPLNLIMGEQNTNSSGSCERKSSPANENECEICGMRFQTMYLAQLHFATAHGPSQVLKTSATDEFSTVLSANNNDKQVPDSISEDLQKLQTMILQLNDLDVSKVAAGNSTTTLSTCTMCSKEFENRYYLHAHLMTEHGLLLENNSHLSHIDMDNTTEITSEMQQNTDNQLKILPMPSSGTMDKKDDSNGFMGPEKSMRTLNTNGNTSNSNSNSNAVAVGSERRSSVTMTPANSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVVCNICNKELCSKYFLRVHKHNTHGIVQDNLGSSSSTSSTQRQTNPELDQGTLPATTQPITGTTDISIPTSGTADSSLKLGDLSDLSNRYFTHFTEVCTICSRRFRSTKWLKAHLLGDHGKAGTEKWNELEMQLQQSFTQQQQLQSRKNITERSSPTLRIPNGGHGQDIKADTGMHNVLSSIFGTDESTVKQYHCSFCSFSTPVLAFLFVHERSHSHPQSHSTTNTNGGNTPVNTNTNTSTNIVPSAMSPLYCAVCNQTFRQPEQLHHHIVTQHTFLSFFGNVRQPTPTPTPTPALPKPEEQEQKQPEDHKCFSCSTCGRLNKLEVSTDISITLQDVSKQRQLPASYALPQSQSQLKAKYTMQAFLMDEPSTDTSEALSAGSGTVLLTNKEANGDEEREQTEAPPDRRFAPSIVFLPVLEKLTSPLTVSFTLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00767666;
- 90% Identity
- iTF_01105160;
- 80% Identity
- -