Basic Information

Insect: Harpalus rufipes
Gene Symbol: -
Assembly: GCA_951394225.1
Location: OX596280.1:3143371-3155763[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00089 0.19 14.1 0.4 1 23 440 462 440 462 0.98

2 8 0.0018 0.39 13.1 3.0 2 23 598 620 598 620 0.96

3 8 0.00074 0.16 14.3 3.2 1 23 626 648 626 648 0.98

4 8 0.00022 0.048 16.0 2.2 1 23 654 676 654 676 0.98

5 8 0.00022 0.049 15.9 1.8 1 23 683 705 683 705 0.97

6 8 1e-05 0.0022 20.2 1.9 1 23 713 735 713 735 0.95

7 8 0.08 18 7.9 1.8 1 23 741 763 741 763 0.94

8 8 3.6e-05 0.0079 18.4 2.9 1 23 769 791 769 791 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00089	0.19	14.1	0.4	1	23	440	462	440	462	0.98
2	8	0.0018	0.39	13.1	3.0	2	23	598	620	598	620	0.96
3	8	0.00074	0.16	14.3	3.2	1	23	626	648	626	648	0.98
4	8	0.00022	0.048	16.0	2.2	1	23	654	676	654	676	0.98
5	8	0.00022	0.049	15.9	1.8	1	23	683	705	683	705	0.97
6	8	1e-05	0.0022	20.2	1.9	1	23	713	735	713	735	0.95
7	8	0.08	18	7.9	1.8	1	23	741	763	741	763	0.94
8	8	3.6e-05	0.0079	18.4	2.9	1	23	769	791	769	791	0.99

Sequence Information

Coding Sequence: ATGCATCACGTGGCGAACCAGAGCTGTTACAAACCAACAGCAGATGATTTTGAAACTCCAACAAGGCAATtacgaaatttaaaaaacaaatctaCACCATCTATTAGTAATACGATTCCCATATCGTCTGACGATAACGATTCATCATCTGAAAAATCCAGTGATGACGATGATGATTATGTTCCTTCGGATGAAGAAACCTATTCTTCTTCAGAAGATGAAGAAATGGAAGAGAAAAAGGAAGAAACTGTTGCTAACATTCCACAAAATAATTCTGGTGCTACAAACATCACATCGAATACCATATCTTGTAAAGAAATTAGTGTTAGTACTAATAACAGTGTAACCACGAAAAATCAATCATTGTTGATACGTACTTATCACAAAATTTgggcaaaaaataatttacaattaacaCCATCTTTAATTACTTATGAACGAAAGGCAAAAACGAACAACGAAAAAATACCAATGGAAGATGGTAGAGATTCTTCCAAAGATTCCAGTGTTGTATGTGTTCTTTCCGATGAAGAATCAGGTTCTTCGctaagtaatattaaagaaaagaataaTAGTCAATTTACTACTGTTATACAACATacaagtaaacaaaataaatctgttaaTAGTGTTTCTGCAACAAATAACgaaaaaacaattgaagatgGTCAGGGATCTTCCAAAAATTCCAGCGATATAATAGTTCTTTCCGATGAAGAATCCAGTTCAGTAAATAATGTTAAAGAAAAACTTAATACTGTTATACAACATAGaaacgaagaaaataaaactgttAATAGTGTTTCTACAATAAATAACgaaaaaacaattgaagatagACAGGGATCTTCCAAAAATTCCAGCGATATAATGGTTCTTTCCGATGAAGAATCCAGTTCAGTAAATAATGTTAAAGAAAAATCTAATACTGTTATACATCATAGaaacgaagaaaataaaactgttAATAGTGTTTCTACAATAAATAACGAAAAATCACCAATTGAAGATGGACAGGGAACTTCCAAAAATTCCAGCGATATAATGGTTCTTTCCGATGAAGAATCCAGTTCAGTAAATAATGTTAAAGAAAAACTTAATACTGTTATACAACATAGaaacgaagaaaataaaactgttAATAGTGTTTCTACAATAAATAACgaaaaaacaattgaagatgGACAGGGAACTTCCAAAAATTCCAGCGATATAATGGTTCTTTCCGATGAAGAATCCAGTtcaATGCACATTGCAGATCAAACCACATATGTCATCAAACAACTATCATCACCTAATGATGATATACCAAAAATATACACATGTCCAATTTGTAAAGAAACTTTTGATTTCGCTTTAGTATTAAGAAGTCATCTGCAGCGTCACGCCTATTTCTCAAGAGGTTCCAATCCTAAAACTCCAAAGGTTTACAATTCATACCACATTagtatagtaaaaaataaactcCGTATACCGTTTACATCAGATGATGGCATTAAAGACATCATAACCACAGTTCATTGCCATGTAGATGATACTGAAAAAACCATTTCAGCTTATCAAACTATAATGAAGAAACTTTATAATCACataaaaaatccaaatattgATAGGGACTACATGAATTTAGTAAAACTTATTTTATGCCTTTATAATATTGACATAATAGATGAAATTATGGAACTGTCAAAGACTGATAAAAACGATGAAACTAAATGTGCAGTGAGTAAATGTGATTTTTCTGCCCCGCGTCGTTTTATGAATTTCCATATGCTGGAACATACGAAGAATAGGTGTCCCAAGTGCTTCAAGGCGACCAAAAAAGCTGAAGAACTGCAGAGACATATCAAGCATAAGCACCAGAACTACAGAGGGTTCCAATGTAAAAAGTGCGGCAGAAAATATCGATTCGAGATGTACTTAAAGtTACACGAACAAACCCATGTTGAAGATTGTCCGTACCATTGTGATATCTGCAACCGAAAATTCATTTTCAATGCCAATTACCTCCAGCACATGGTTACACACGACGAAAGTAAACGAGTACACGAGTGTGAATACTGTGGCAAGAAATTCTTTGGAAAAATTGCCTTATTTGCCCATACAAAAAGCCATACGACTGTCCCGAAGACCAATTTTGACTGTGATATATGTGGCAAGAAATTTACCAGAACTTCAAATTTATATCAACATAAATTTATACACATTGGCAAAAAGAAATTCGAATGTGCCACTTGCGGGAAGAGATTCTTATGGAAGACGCATTTGAAGCAACATGTGGTAACGCACATGGACGTCAAAGCGTATCAGTGTTACATTTGCCAAAAAGGATTTAGAGATGGCACTTCGCTTAAGaggcacatacatacacacagcaaaggcaagaaaaataaacagaaaagaaagaaaagaaaagaaGCAGAAACTTCAAACAATGAATCACAAAATTCATCAGGagaggaaaaagaaaataatacacaatccaaaaagaagaaaatacaacAGAAGAGGAAGAAACGCAGAAAAGCAGAAACATCAAACAATGAATCACAGAATTCCTCAGGGGAGGAAGATGAAAGCTACGAGGACGATAATAAACACTCCAAAAAGAAgaataaacaaaaaagaaagAAACCAAAAGAAGCAGAAACATCAAACAATGAATCGCAGAATTCCGGAGAAGATAATTccgaaaataaatcaaatgaggCAGacgataataataaacacaccaaaaagaagaaaaataaacagCAAACAAATAAACGAAAAGCAGAAACATCCAATTCTTCAGGACAGGACGAAGAAAATGACGAAGTATCAAGCGAGGAAGACATACCGTTAAGTAGTTTATTATCGAATCCATCAAAAGAAAGCTCAAAGAAAGAAACAAATAACACGAAAACGGAAGAAGAAGAAAACAAGGTATCAAACGATATATCAGACAATTCTACAACAGAAATAAAAGAGAAAAGTACAGacgatgaaaatataaaaattcctGAATCTTCGtcaaagaatgaaaataaaaacgatAAACAAATAGAAACAGATGAAATACAATCAACGGAAAATTCTTCACCGCAAAACgacaaaaaagaaataaaaagaattgaAGAATTAATATTACATCCCATAAATAAACTAGAAATAGATGCAAAACCAGTAGAAGACAGTTTGGAAACACCAAAAGTAAAATCTCCATCAAATTCTTCCCCGGAAAAAGAAGAAACATACATAAAAGAAATTGAAGATATTGACAATTCGTTTAAGAGTGAATTGATATTATTACCCATAACAGAAAAACTTGAGAAAGACaaaaaaactacagaagaaaactctgaaattgaaaaatcatag
Protein Sequence: MHHVANQSCYKPTADDFETPTRQLRNLKNKSTPSISNTIPISSDDNDSSSEKSSDDDDDYVPSDEETYSSSEDEEMEEKKEETVANIPQNNSGATNITSNTISCKEISVSTNNSVTTKNQSLLIRTYHKIWAKNNLQLTPSLITYERKAKTNNEKIPMEDGRDSSKDSSVVCVLSDEESGSSLSNIKEKNNSQFTTVIQHTSKQNKSVNSVSATNNEKTIEDGQGSSKNSSDIIVLSDEESSSVNNVKEKLNTVIQHRNEENKTVNSVSTINNEKTIEDRQGSSKNSSDIMVLSDEESSSVNNVKEKSNTVIHHRNEENKTVNSVSTINNEKSPIEDGQGTSKNSSDIMVLSDEESSSVNNVKEKLNTVIQHRNEENKTVNSVSTINNEKTIEDGQGTSKNSSDIMVLSDEESSSMHIADQTTYVIKQLSSPNDDIPKIYTCPICKETFDFALVLRSHLQRHAYFSRGSNPKTPKVYNSYHISIVKNKLRIPFTSDDGIKDIITTVHCHVDDTEKTISAYQTIMKKLYNHIKNPNIDRDYMNLVKLILCLYNIDIIDEIMELSKTDKNDETKCAVSKCDFSAPRRFMNFHMLEHTKNRCPKCFKATKKAEELQRHIKHKHQNYRGFQCKKCGRKYRFEMYLKLHEQTHVEDCPYHCDICNRKFIFNANYLQHMVTHDESKRVHECEYCGKKFFGKIALFAHTKSHTTVPKTNFDCDICGKKFTRTSNLYQHKFIHIGKKKFECATCGKRFLWKTHLKQHVVTHMDVKAYQCYICQKGFRDGTSLKRHIHTHSKGKKNKQKRKKRKEAETSNNESQNSSGEEKENNTQSKKKKIQQKRKKRRKAETSNNESQNSSGEEDESYEDDNKHSKKKNKQKRKKPKEAETSNNESQNSGEDNSENKSNEADDNNKHTKKKKNKQQTNKRKAETSNSSGQDEENDEVSSEEDIPLSSLLSNPSKESSKKETNNTKTEEEENKVSNDISDNSTTEIKEKSTDDENIKIPESSSKNENKNDKQIETDEIQSTENSSPQNDKKEIKRIEELILHPINKLEIDAKPVEDSLETPKVKSPSNSSPEKEETYIKEIEDIDNSFKSELILLPITEKLEKDKKTTEENSEIEKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -