Basic Information

Insect: Harpalus rufipes
Gene Symbol: -
Assembly: GCA_951394225.1
Location: OX596281.1:11642424-11657433[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.016 3.5 10.1 0.1 1 23 382 405 382 405 0.97

2 17 0.047 10 8.6 1.8 1 21 413 433 413 434 0.94

3 17 0.9 2e+02 4.6 2.4 2 23 443 464 442 464 0.89

4 17 0.11 25 7.4 1.3 2 23 472 494 471 494 0.92

5 17 8.4e-05 0.018 17.3 1.0 1 23 500 522 500 522 0.98

6 17 0.0064 1.4 11.4 1.5 1 23 528 550 528 550 0.94

7 17 0.00014 0.03 16.6 4.9 1 23 556 578 556 578 0.99

8 17 0.0036 0.79 12.1 0.3 1 23 588 610 588 610 0.97

9 17 0.0081 1.8 11.0 2.1 1 23 626 648 626 648 0.97

10 17 0.15 33 7.0 3.5 1 23 694 717 694 717 0.93

11 17 0.0027 0.58 12.5 1.3 1 23 724 747 724 747 0.98

12 17 0.052 11 8.5 6.8 1 23 752 775 752 775 0.98

13 17 0.00024 0.051 15.9 0.6 2 23 781 802 780 802 0.97

14 17 0.00053 0.12 14.8 0.7 1 23 808 830 808 830 0.98

15 17 2e-05 0.0043 19.2 2.1 1 23 857 879 857 879 0.98

16 17 4.2e-05 0.0092 18.2 1.0 1 23 1342 1365 1342 1365 0.96

17 17 1.3 2.8e+02 4.1 1.3 2 23 1370 1392 1369 1392 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.016	3.5	10.1	0.1	1	23	382	405	382	405	0.97
2	17	0.047	10	8.6	1.8	1	21	413	433	413	434	0.94
3	17	0.9	2e+02	4.6	2.4	2	23	443	464	442	464	0.89
4	17	0.11	25	7.4	1.3	2	23	472	494	471	494	0.92
5	17	8.4e-05	0.018	17.3	1.0	1	23	500	522	500	522	0.98
6	17	0.0064	1.4	11.4	1.5	1	23	528	550	528	550	0.94
7	17	0.00014	0.03	16.6	4.9	1	23	556	578	556	578	0.99
8	17	0.0036	0.79	12.1	0.3	1	23	588	610	588	610	0.97
9	17	0.0081	1.8	11.0	2.1	1	23	626	648	626	648	0.97
10	17	0.15	33	7.0	3.5	1	23	694	717	694	717	0.93
11	17	0.0027	0.58	12.5	1.3	1	23	724	747	724	747	0.98
12	17	0.052	11	8.5	6.8	1	23	752	775	752	775	0.98
13	17	0.00024	0.051	15.9	0.6	2	23	781	802	780	802	0.97
14	17	0.00053	0.12	14.8	0.7	1	23	808	830	808	830	0.98
15	17	2e-05	0.0043	19.2	2.1	1	23	857	879	857	879	0.98
16	17	4.2e-05	0.0092	18.2	1.0	1	23	1342	1365	1342	1365	0.96
17	17	1.3	2.8e+02	4.1	1.3	2	23	1370	1392	1369	1392	0.93

Sequence Information

Coding Sequence: ATGGTTCAGTTGTGCAGCAACGAAACCTTTGAagaatttcaacaaaaaatttTTAGAGAACATAATTTGTGCTTAACAGTAGAagattttcaaatattctttgATGATTTAACATCTGCCGATAATTTATTCAATTGTTTACGAGAAGCTTTGAACTTAggAAATGAAATACATGATGAAGacatgatttatgaaatatatttagctagaaatcttaatttaaatattaaaactgagCATAATAATTTCACCATAAATGAGGCTATTGAAAATACAACTGATAAATATGATTCATCTATGATGATGTTAAATGAAGAACCACCAGTTAATCAATTCACacctttaaatgaaaatattttcgatACGCCTGATATTCCAAATAACAAACCAGAAGATGTAAACAATGGTCAAATcttgaatgaaataaattccGTAGAAGCAATAAACAAAAACGAAATATCAGAAAAATGTGAACTAAATAATGCAGTAGAAAATAAATCAATGGAAACTAATGATATATCTATAAAACCATCAGAATCAACTGAAAATTACAGCTACATGGATATTGAATCAAAAATGGCAGAAATGCATGATTGCAATGAAGAAGTTATTACGGATTTATGTAGATTGTGTGCCAAAAATGTTACaggagaaaataaaatagaaatttataaCGAAAATAACCAAACAGACAACTTAGAGGAAAAAATAAATGGTTCTCTAccaatcaaaattaaaaaggaagatGGTTTACCACAACAAATTTGTGGTACTTGCACAGATAGAATAAAAAACTATTACGATTTTGTTCAAATTGTTTTAGAAGCGGACAAACAACTGAGAATAAAATTTCccattataataaatgattcACTCAAAAATACATCCAACGAGGAATATATGACAGAATTTCTAAATTCACCTCCAGCAAATAAAGAAACTacatcaaaaaatataaaatttgaattagagGATAAAGTAGACAGTAGCGAAAATGAATTCGAGGCCGAATATCTCGAAATGGATGCTTCAGTAGACAAATCTGAAACAGATAAAAAAAACTGCCGACTTTGTgatttaataatagaaaatttagaTGAAGCAGTTAGCCACGGAATAAATATGCATCATATTGAAAATCTTTACGCTTGTGTATTTTGTGAATTAGGTTTCGAACGATCAATTTCTTTGGATCAACATTTAAGAACGGaacataaaaatatgtttcaacgcaaatttaaatgtaatgtaTGTTCAAAAAAATACGGCAGTCAATTATTGCTTTTGAAGCACACTTGTGTTAAGGCAGCTTCAAACCAAACTCTTCATTGCGAAGTCTGCAATCAGTCTTTTCCCACAAAAGTTAGACTAAATTTTCATAGACAATTTCATTTAAAGGATGCTCGTCCTTTACATTGTACAGTttgtaacattatatttaaaactgaAAACGAATTTTTCGATCATGTTAATTTTATGCACGAAGCACATCAAACTTATCCATGCGATATGTGTAATAGAGTTTTCAGTCTTCGTTCTCTACTgaataatcataaaaaaaatcataacggCTTGCGCAAACACAAGTGTGAGATTTGTAATAAGACTTTTTTGGATAAGCAGACATTGAAGGAACACGAAGTGATTCATTCAGAAACTAAATTGTACCAGTGTCATGTATGTGGAAAGCATTTGAATCGATTAAGCCGTTTGAAAAGACATCTACTCACTCATGAATCTGATCCAGTTGTTAATGATGTACACGTTTGTGATATTTGTAAAGAAGCTTTTGCTGACCAAACCAATGCAGAATTACATAAATCTACTCATCCTGACAAAAAAGACTgcgttaaaattatttctaccgACAAAGTATTTCGATGTGAGTTTTGCGAAAAATGCTACTATACTCCTTTAGCTTTAAATGAGCATAGAACAATTCATAATGGTCCTACTCCATATACTTGTCATATATGCAAAGCAcagtttagtacttatccaagatgCACAACCCATAAAACAACACACGGATTGTATAAAGATGGCGCGGAAAAAGATAATtttccagttgttaaaaattttcTTTGTGAGCATTGTGGAAAATCATATCTTCATTGGACTTATTTagGTCTTCATCGGCGATTGAAACATTCAGATCCTCCCCCAGTGTACATGTGTGTAGATTGCAACCAACATTTTCCGAATAGTTGGGGCCTTGCTTATCATCGTAAAACTAAACATCTACAAGAAACTTTTAAATGtaacatttgtaataaaattctaGCGAATGAACATTGTTTAAAGTTGCATCACCAAACGAAACATTCCCAAAAAGAAAATCAATGTGTTGTATGCGGCAAAATATTCCAACATCAAATTTCCCTAGAAGCGCATTTAAAATCTCATAAAGGGTTGAGAGAATTTAAATGCGCactatgccctacaactttcaCAGACCTCCAAGCACTTACAATCCATTTCAAAAAGCACAAAGCTAgaaaatttgtatttcccgAAGACAAATCCAATCCGCCATTTACTTATTTAGTGGATCAGGAAGATCGGCCATTTTCATGCGACATTTGCGGTTTATCATTCCGACGACAATTCACTTTAAGAAATCATAAACTCAAACACGTAAAGCCTTCCGAAACTGGCAGTTTTGTTCTCATGGTTGACATGAAAGAAGACGAAGAACAAGAAGACAATAAAAATGTGGCTCAATCATCGCAATCATCACAAATTATGGAAAACAAAcctcaagaaataaagtacgtTCAAATTCCAGTTGGGCAAGAccaaacacaaaattatattgacaTTGGGAATGGAAACTATGTTCCTATTGAAGGCAATACTATTAATGTGGATGGAGAACAATATGTTCTTGTGGATGAAAATGGAAAAACTTTAGGAAGAAATCAAGAATTTGAAATGATAGTCGATGAAACGCTAAGAGAAGAAGAACAGCCAGTTATACACCCAGAACAATTTGATAACACTACAGTTATATCCTTGGATAAAATGTGGTCAAATCTGCTTGGTCCAGCTATACACAGAGAGACAGATCCCACCAGTCAGGCGGATTGCATTTTTGGTGGATGCACGCAAGTTATTCAAGACACCGGTCCATTTTGTATATGGAGCTCAATGACCTCAATACAAAAAGAAGATGAAATCACACAACAAATTTGTAAATCGTGCTATTTTTTCACCAATACTGTCTATGAATTTCGATTGAGCTCCCTACAACACGAGACAGATCTAAGAAGAGCTTATCTGTTAGCTAGATCTAAGGCACCGGACGAAGATTTCGTTGAAGAAAAGACTCCTATTACCTATCCATCAGAAGAAAATTCATCAATTTCTCAAGAATCATTCTTAAACGCTTTTAATTTAGAACATAAAAATCATCATTCAAGTGTTTTAAGACTTAAACGTAAATTTCCGTTGATAAATATTCCTAAAGAATGGTGTGAGCTAGATATTGAACCTGAAGTGCGGATAGATCTTCGTGAATATGATAATTATGTTAGTAAAAAAGTGAAGACTAATGAAGATCTTGGTATTTGGTCAGTGCGTAATAAACTTTCTGGCGGAAAACATCAGCCGGATTTAGTTCTTACTCGCGTGCGACCTAATCATGAAACGACTTCTAATAGTGATATTAGTGAAATAAGCAAACCACAAAATAAGAAGAAATTTTCACCTCGTAAGAGAAGAAGGAGGCAGTGGCAAAGAGGCAATATTAACCGCAACACGAAGAAAATTTCACCACGAAAGGTTCGAGAAGAAAATGATCATGATGATTTCATTTATGAATCAAATAATATTCCATCGGAATCAGATTCAATGAGTATTCATTCCACGATGGAACAAGATCGAAATGTTTTGAAGAATCTGTTACATACCGATGCTCATTTAAATGGTTCATTATCAGATAGTTCTTCTTTCCCTCATATTGCACCAAAAGGAGAAGACTTCTGCAACTTACTGATAACAGTAGGCGAAGAAGTCAAGACGTATATTTGTCAGACATGTAATAAAGTGTTTGATACTCAGTCCGCATTAACAATTCACAAAAAATACTCTCATAAACCAAGCTTACGTTGTATGAAGTGTTCTGAATCGTTTAATATTGTCGAAAGTTTAGTGAAACATAATGCCACATGTCATCCAGAAACAGTTGCTAGTACAAgccaaacaaataataaaacggagaataaaacaaatgaaactcAGGAAGAAAACATGGATGAAACAAGTGAAAAATCGATTGATTCAGCGCATAAAAGTGTTGCAAGAAAGAGAACGGGTGGAATACCGCTTAAACATACAGTTTATGATAGCGAAACTGAACCTAAAATTGAAATAGATTTTGAGCCTAAAAAAGAAACAGATTACGATGCATACGTCATATCAtccgatgatgatgatgatgatgatgatgatgtacaaataacaaatgttataaGCAATTCGAATAACAGTACGAATGTTGACATGGATAGAATAATAAATGCAGCTTTAGAACCACAAAAAATGACAGAaagtgaaaaatgtattatagaaaaCACTGTCAGTCCTCAAGTTACGAAAGTATCTCAGTCCGCAGTTAATGATGTTCTACTCATAACTGATAgtgatgaagaaaaaaattcaaatgaaaaacCCCTTCCCAAATTAGTTGCTATTAAACCTAAATTCGTACCTATTAGACCTAAATTACAACCTATTAAACCTAAACCAACTCCCTCAACATCACAATTTCAACCTACTGAAATAAACCACATTAGTGGCAATGACAGTTCACTCAGTTTTGAAAGGAATAACGATAATATTAGCCAAAAAATAGTAGTAGTTCCTTCTTCTGAAGATAAAGAACACATGGATGCCGCGTCCAATGCGTCTATTAAAGCCAAAATCACCAACGAACTCAGCTATATTAACTACATTTTTAGTAAATGTAACTTCGCCGATGGCAACAAAAAAGTtgataaaaaatggtttttgaAAGACATACATAAATTCACAGAGAAAACTATTCTCCCAATTGAAGTAATTCGGTCAAATTCTGACGAAATTAAAGCTGAATACGGGCGCGGTTCGTTAGAAAAATTAAGCTCTAAAAATCCATTCTGGAATCCGAGTAAAGCTATAGGCATCTACAAAGTGTCGAACCCAAAAGAATCCACTATTACGACAGGAGATCttaataatcaatatttacCATGTGAGAAGAGAGCACTTTGTCAAACACCAACTTCGGCAACAATAACTCAAACTGCTGCTCACACTTCACAAAGTGTTCTGAAGTCTAATATTAATACTTCTACTTCTAATATTCAATACAGTTCAACAAAAACTAGCAGCCTTGCACCTACAAAACCCAGTACTCCCGCAGTTAGGGTGGAACCAACGAAATGTATTAGTATTGCTTCAGCTGGTAAAGTCAATACAACTTCGGTTGTGGCTACAATCCAAAGTAGAACTGCTCCGATCGAATCTGTAGCTAAAGTAGATGCCAGCATTCAAAATCCAACATTCGTAACTATACAAAACCAAATTGTTAGTAGTGTTGCTTCTGGATGTTCTACCAATAATGTAGCTCCATCTGCTGCTTTACGTCCCAAGCCTTATTCTCCATCGCCGACATCGCATAATCTACCAATACAAAGCAACCGCGTGAAAACTTACGGTAGGACATATAAACCGATTTCTCCTAAACCTGTATTACCAGTTAGTCCGAATCCATCTtcaacggaagataaaaaaaagtCTGAACAGAAACCACCAGAACGGAAGCAAACACAAGGGCCATTCCTCGTACCAAATGGTTACATTTTAATGGGTGTTTCAACGAACAACGATGAAGTTTGTCAAAATGAAGATAATAAAGGACCATCTATTTCCAATCAACCTATCTTACTGAACGGCATGCCATTATCTTCTCTTACCAACATGAGGAATCAAAATCCCCAAATGGTATTACAACCAATGTCACAACAAACCAACGTTAATATTCAAAACTGTATCAACATATGTCATCAAGAAGTGTCTGCAAACACTCAGCAGCAATATGCCACAATTACTGTGCCAGTTATGGTACCAGGACAAAATGAACAACAAAACCAGATTGTACAACCAACTCATCAATTGATACAACCTGCTCAAAACCAAGTGGTACAAACAGTAGTGGCACCAGTTCAATCTATTGATTCAAATGAATCAAATGGTTCCAGACCTGCGATTAGAATTAAAAATCTTGCAGAATTAACGGGAGAAAATTCGAAACCTGTCCAAAGAAATGAATTACATAACATGTATACTACAGCTCTGTCAAATTACGCACAGACTAATATTAGTACTGTATCAGCGAGCCAAGATGagtatatacaaatttcataa
Protein Sequence: MVQLCSNETFEEFQQKIFREHNLCLTVEDFQIFFDDLTSADNLFNCLREALNLGNEIHDEDMIYEIYLARNLNLNIKTEHNNFTINEAIENTTDKYDSSMMMLNEEPPVNQFTPLNENIFDTPDIPNNKPEDVNNGQILNEINSVEAINKNEISEKCELNNAVENKSMETNDISIKPSESTENYSYMDIESKMAEMHDCNEEVITDLCRLCAKNVTGENKIEIYNENNQTDNLEEKINGSLPIKIKKEDGLPQQICGTCTDRIKNYYDFVQIVLEADKQLRIKFPIIINDSLKNTSNEEYMTEFLNSPPANKETTSKNIKFELEDKVDSSENEFEAEYLEMDASVDKSETDKKNCRLCDLIIENLDEAVSHGINMHHIENLYACVFCELGFERSISLDQHLRTEHKNMFQRKFKCNVCSKKYGSQLLLLKHTCVKAASNQTLHCEVCNQSFPTKVRLNFHRQFHLKDARPLHCTVCNIIFKTENEFFDHVNFMHEAHQTYPCDMCNRVFSLRSLLNNHKKNHNGLRKHKCEICNKTFLDKQTLKEHEVIHSETKLYQCHVCGKHLNRLSRLKRHLLTHESDPVVNDVHVCDICKEAFADQTNAELHKSTHPDKKDCVKIISTDKVFRCEFCEKCYYTPLALNEHRTIHNGPTPYTCHICKAQFSTYPRCTTHKTTHGLYKDGAEKDNFPVVKNFLCEHCGKSYLHWTYLGLHRRLKHSDPPPVYMCVDCNQHFPNSWGLAYHRKTKHLQETFKCNICNKILANEHCLKLHHQTKHSQKENQCVVCGKIFQHQISLEAHLKSHKGLREFKCALCPTTFTDLQALTIHFKKHKARKFVFPEDKSNPPFTYLVDQEDRPFSCDICGLSFRRQFTLRNHKLKHVKPSETGSFVLMVDMKEDEEQEDNKNVAQSSQSSQIMENKPQEIKYVQIPVGQDQTQNYIDIGNGNYVPIEGNTINVDGEQYVLVDENGKTLGRNQEFEMIVDETLREEEQPVIHPEQFDNTTVISLDKMWSNLLGPAIHRETDPTSQADCIFGGCTQVIQDTGPFCIWSSMTSIQKEDEITQQICKSCYFFTNTVYEFRLSSLQHETDLRRAYLLARSKAPDEDFVEEKTPITYPSEENSSISQESFLNAFNLEHKNHHSSVLRLKRKFPLINIPKEWCELDIEPEVRIDLREYDNYVSKKVKTNEDLGIWSVRNKLSGGKHQPDLVLTRVRPNHETTSNSDISEISKPQNKKKFSPRKRRRRQWQRGNINRNTKKISPRKVREENDHDDFIYESNNIPSESDSMSIHSTMEQDRNVLKNLLHTDAHLNGSLSDSSSFPHIAPKGEDFCNLLITVGEEVKTYICQTCNKVFDTQSALTIHKKYSHKPSLRCMKCSESFNIVESLVKHNATCHPETVASTSQTNNKTENKTNETQEENMDETSEKSIDSAHKSVARKRTGGIPLKHTVYDSETEPKIEIDFEPKKETDYDAYVISSDDDDDDDDDVQITNVISNSNNSTNVDMDRIINAALEPQKMTESEKCIIENTVSPQVTKVSQSAVNDVLLITDSDEEKNSNEKPLPKLVAIKPKFVPIRPKLQPIKPKPTPSTSQFQPTEINHISGNDSSLSFERNNDNISQKIVVVPSSEDKEHMDAASNASIKAKITNELSYINYIFSKCNFADGNKKVDKKWFLKDIHKFTEKTILPIEVIRSNSDEIKAEYGRGSLEKLSSKNPFWNPSKAIGIYKVSNPKESTITTGDLNNQYLPCEKRALCQTPTSATITQTAAHTSQSVLKSNINTSTSNIQYSSTKTSSLAPTKPSTPAVRVEPTKCISIASAGKVNTTSVVATIQSRTAPIESVAKVDASIQNPTFVTIQNQIVSSVASGCSTNNVAPSAALRPKPYSPSPTSHNLPIQSNRVKTYGRTYKPISPKPVLPVSPNPSSTEDKKKSEQKPPERKQTQGPFLVPNGYILMGVSTNNDEVCQNEDNKGPSISNQPILLNGMPLSSLTNMRNQNPQMVLQPMSQQTNVNIQNCINICHQEVSANTQQQYATITVPVMVPGQNEQQNQIVQPTHQLIQPAQNQVVQTVVAPVQSIDSNESNGSRPAIRIKNLAELTGENSKPVQRNELHNMYTTALSNYAQTNISTVSASQDEYIQIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -