Basic Information

Insect: Harpalus rufipes
Gene Symbol: L
Assembly: GCA_951394225.1
Location: OX596278.1:6790552-6798819[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 2e-05 0.0044 19.2 1.1 1 23 71 93 71 93 0.98

2 21 0.26 56 6.3 5.9 1 23 99 121 99 121 0.98

3 21 1e-06 0.00023 23.3 2.1 1 23 127 149 127 149 0.99

4 21 2.2e-05 0.0047 19.1 0.2 1 23 155 177 155 177 0.98

5 21 0.044 9.7 8.7 7.5 1 23 192 215 192 215 0.95

6 21 0.0066 1.4 11.3 2.4 1 23 308 331 308 331 0.96

7 21 0.19 41 6.7 0.0 3 23 347 368 345 368 0.94

8 21 0.11 24 7.5 0.2 3 23 432 452 431 452 0.98

9 21 0.066 14 8.2 2.9 2 23 485 506 484 506 0.90

10 21 0.0052 1.1 11.6 0.1 3 23 516 537 514 537 0.93

11 21 0.025 5.4 9.5 0.3 1 23 542 565 542 565 0.92

12 21 0.00086 0.19 14.1 0.5 1 23 640 663 640 663 0.98

13 21 3.1 6.7e+02 2.9 0.6 3 23 724 746 723 747 0.85

14 21 0.0024 0.52 12.7 4.6 2 23 760 781 759 781 0.96

15 21 0.005 1.1 11.7 0.5 1 23 791 813 791 813 0.98

16 21 1.9 4.1e+02 3.6 2.1 3 23 822 842 821 842 0.94

17 21 0.00077 0.17 14.2 0.8 1 23 930 953 930 953 0.95

18 21 0.21 46 6.6 0.3 1 23 957 979 957 979 0.96

19 21 0.018 4 9.9 2.0 1 23 987 1009 987 1009 0.96

20 21 0.0051 1.1 11.7 0.0 1 23 1017 1039 1017 1039 0.97

21 21 0.072 16 8.0 1.0 1 23 1046 1068 1046 1068 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	2e-05	0.0044	19.2	1.1	1	23	71	93	71	93	0.98
2	21	0.26	56	6.3	5.9	1	23	99	121	99	121	0.98
3	21	1e-06	0.00023	23.3	2.1	1	23	127	149	127	149	0.99
4	21	2.2e-05	0.0047	19.1	0.2	1	23	155	177	155	177	0.98
5	21	0.044	9.7	8.7	7.5	1	23	192	215	192	215	0.95
6	21	0.0066	1.4	11.3	2.4	1	23	308	331	308	331	0.96
7	21	0.19	41	6.7	0.0	3	23	347	368	345	368	0.94
8	21	0.11	24	7.5	0.2	3	23	432	452	431	452	0.98
9	21	0.066	14	8.2	2.9	2	23	485	506	484	506	0.90
10	21	0.0052	1.1	11.6	0.1	3	23	516	537	514	537	0.93
11	21	0.025	5.4	9.5	0.3	1	23	542	565	542	565	0.92
12	21	0.00086	0.19	14.1	0.5	1	23	640	663	640	663	0.98
13	21	3.1	6.7e+02	2.9	0.6	3	23	724	746	723	747	0.85
14	21	0.0024	0.52	12.7	4.6	2	23	760	781	759	781	0.96
15	21	0.005	1.1	11.7	0.5	1	23	791	813	791	813	0.98
16	21	1.9	4.1e+02	3.6	2.1	3	23	822	842	821	842	0.94
17	21	0.00077	0.17	14.2	0.8	1	23	930	953	930	953	0.95
18	21	0.21	46	6.6	0.3	1	23	957	979	957	979	0.96
19	21	0.018	4	9.9	2.0	1	23	987	1009	987	1009	0.96
20	21	0.0051	1.1	11.7	0.0	1	23	1017	1039	1017	1039	0.97
21	21	0.072	16	8.0	1.0	1	23	1046	1068	1046	1068	0.94

Sequence Information

Coding Sequence: ATGATGTTGTTCAAAGGAAACAGCAGCAGGCTTGAGCTGCTCATTGAGAAAATTCATTCCACTAAGGACCACGCCGAAGAAGCCCTGGGCACGGAAAGCAGCTCGCGGTCCGAGACGCCCGACGACCACACCTCGCCGCCGTCCTCCTGCGCGACGCCCAACTCCGACGCTGAGCTCAGCTTCACCGTCGGCGTTACAGACACCACTCCGTATGCCTGCCAGTTCTGCGACAAGGCTTTTCCTCGGCTCAGCTTCCTTAAAAAACACGAACAGACCCATGGAGATCACATGCCGTTTCGGTGCGAATTCTGTTCCCGGCTTTTCAAGCACAAACGATCCCGCGACCGGCATATTAAGCTGCATACTGGGGATAAAAAATATCGCTGCAGTCAGTGCGAGGCTGCTTTTTCCAGAAGCGACCATCTCAAGATTCACATGAAGACACACGACACCCAAAAACCGTTCCAGTGTACAGTGTGCAATCGCGGCTACAACACCGCCGCTGCACTCACGTCGCACATGCAAAACCACAAGCCCAAACCTAGCGAAGATTCTACATCTACTCCAGAAACATTCCATTGTACTCATTGCCCTGATTCATTCACGAAACACGACCATTTGCAAACGCATCTACTCAATGCGCACACCTCAGAAGAATCCAGAAAGAGTGTTAGTGTTCCTTTATCCATAGCGGAACAAATATTACCGTTAACTCCTAAACTAGCTTGTATATACTGTACGAAAGATAGTTTCAATACTATGGAACAACTGCAAGTACATGTGCAAGCCATGCACAGTTCCATACTCAATGGAGATTTGCGCGAGTTTTCTTTAAGTCGGCACACTTCAACATCTTCCCCTCATCATTTAATGACGCCTCCTCCTTCACTGGCATCGAATAATGGACACCTTTCGTCAGTATATTCTTGCGATATGTGCACTATGAGATTCCCAACATTGCACAGACTTAGAAAACATTCTCTCACCGTCCATAAAGAGTTAAacgattcaataaatataggcCAAAGTCCTTTGATTTGTGTCCAATGTGCAATACCGTTTAATACATCTGCAGCTTTTACGGAACATTATTTAATGGTACACGGAGGCAGTTGTCCTTCTGTACCGCCAGCGTCACCGCTTCCAGAACAATTAAAACCGACAGATTTAAGTCGGAAGACTCCCCGACCAAGTTCCGAAGATCGTAAATCGAAGAGATTATGTTTGGAAGAATCGTCTAGATTAGATTTGACTCCTAGTACCGGACAATACGATTATCCAAGTATGTTGTTATGTAACCAATGTGACGCAGCTCTTCCAGACTTTGAATCGTTCAGAACTCATTTAAAATCTCATCTAGAACAAGCTGGAGGTGTTAGATCTTTCCTACAAGGAGGCAGTGCTAGTTTACTGGATGCCTTTCAACAAGAATTAAAACTGCAGAACAATTGTGTTTGTCCTCATTGTGGAGCAACGTTCAAGGATCTTGTATCGTGTGAACAACACATATACGCTCATTTTCTATCAACTGCAGTTGAGTACGGGTGCCAAAGTTGTTTGAAAATGTTCCCCAAACCAGATGAACTTCAAAAACATTTAATGGATATCCACGCTCATCATTTGTACCGGTGTTCATTGTGCAAAGAAATGTTTGATTCTAAAGTGGCCATCCAGGTACATTTTGCGGTAAAACATAGTAACGAATGTAAGATGTATAGATGTACAGCGTGTCCGAGTTCCGTGTCGATGTTTCATACAGAATTAGAGTTCAGTCTCCATGTTCGTACAATACATGGAGCTCATGCTTTGCTGTCTGCTCTTCAATCCCATTCCAAGACTTTGAGGTGTATGTTTTGCCGTCAAATTTTCTCCTCGGATTTAGAAATGCAGTTCCATTTGGCGACACATACCAAACAATTTCGATGCCCGATTTGTTCAGAGACATTTCAAATTGAATTCCTTTTGGATAGGCATATGCAGACTTACCACGCTAACACCAGAACTATGAATGGAGAAACCGAGGACAGCGCTGATGCGGACAAATCTGTCAAGAAATGTTCGAGTTCTCCTAATCAAAAACACGTATCTCCAGGCCGAACATCTCAAAAATCTTCGACGGGCGAAAACAACAATGTGAAGAAGCAACACGAAGTTTCTCAACTAAACAACTGTGATATATGTGAACGCAATGATTTTACAACCGAAACTGAATTGGTAGCTCATCGGAAACTTGTGCACCACACGAGAAACAACGCCAAAAATGGAGTCGTTAGTCTACACTGCGCCTACTGCAACGAGAACTGCAAAACTCGCACAGAACTAGAAAACCATATGAAAAGCCATTCGCAAAGTAGTGGCGTCTCCGGCAAACATAAATGCAACATTTGCGATGAAATATGTCCATCGGCAATTCTTCTTGCGGAACATAAACTTACACACTGTAAAGTGATATCAGGAAATTGTTGCACGCAGTGTAAAGCTAGTTTGAGCACCGAAGAACAGTTCTACTCTCATTTGGTGCAGCACAGCAACAACAATAATGCAGCTAATCAAAAAACCAAATCCCAGGTAGCGTTACCTACTCCGTGTGTTATTTGTCGACAGACATTAATTTCGGATGTTGAAGTTCGAATACATTCGCAGTTTCATCTGCGAAATACTTTACAGCAAGCGGAGTACCATTGttctatttgttttaaaatggtgGACATACAAAATGTGCTAGTAACGAAAGGCAGTTATATGTGTTCAGACTGTTTTTCTTTGCCGAATGATTCCCAGCAAAATTTTCATTGCACAGACTGCCAGTTTTCGTTTGACAGTAGTGTAGCATTAGAGCAACATTTGGACTCTGTTCACAATAAAACCTACACTTGTATTAAATGCCAGGCGAGTTTTGATAACGAAAGAGATGTTCAGATACACGTAACAACACATTTAATGTCAGAAGGAAAAAATCACGAGTGTCATCTTTGTCGGCGATTATTTTCAAGCGCCCTGAAGCTTCAAGCACATTTGATTGAACATACTTTTGCTGGATGTGGCGGTTTTACCTGCTATTTGTGTTCTGCTGTGTTCACAGCAGCATCTGGCTTACAGAGCCATATAATCGAACATGGTTTAGCTGCGCGACCCTACGACTGCCCGCAGTGCAATCTCAAGTTCTTCTTCCGTGCCGAGCTGGACAATCATAGCTACAGTCACCTAAACAGAAAACCCTCCACAAATACAGACCTGGACATCAGCCCCAAAGCTTATTATGTTTCACTCAACGGCAAATTTGACCCTTCCAACAATGGAGACCTCTCAAAGTATTACATAAAAGACCACAAGAATAAAAAGATTCAAGAGGTAGATGAGAAGCCAATTGTGAAAGAAGAACCAGCGGATGAAGAGGATAAGAAAGAAGAGTATGTTGAAGTTGACTTTCCCTCAACCTCGACGAAATTTAAAAACGAACAAAATGTAGATGTAGAAGAAAGCTCAACTCTGGAAAACGGAGAAATTCCAAAAGCTACTAGTGATTCAAACACGTAG
Protein Sequence: MMLFKGNSSRLELLIEKIHSTKDHAEEALGTESSSRSETPDDHTSPPSSCATPNSDAELSFTVGVTDTTPYACQFCDKAFPRLSFLKKHEQTHGDHMPFRCEFCSRLFKHKRSRDRHIKLHTGDKKYRCSQCEAAFSRSDHLKIHMKTHDTQKPFQCTVCNRGYNTAAALTSHMQNHKPKPSEDSTSTPETFHCTHCPDSFTKHDHLQTHLLNAHTSEESRKSVSVPLSIAEQILPLTPKLACIYCTKDSFNTMEQLQVHVQAMHSSILNGDLREFSLSRHTSTSSPHHLMTPPPSLASNNGHLSSVYSCDMCTMRFPTLHRLRKHSLTVHKELNDSINIGQSPLICVQCAIPFNTSAAFTEHYLMVHGGSCPSVPPASPLPEQLKPTDLSRKTPRPSSEDRKSKRLCLEESSRLDLTPSTGQYDYPSMLLCNQCDAALPDFESFRTHLKSHLEQAGGVRSFLQGGSASLLDAFQQELKLQNNCVCPHCGATFKDLVSCEQHIYAHFLSTAVEYGCQSCLKMFPKPDELQKHLMDIHAHHLYRCSLCKEMFDSKVAIQVHFAVKHSNECKMYRCTACPSSVSMFHTELEFSLHVRTIHGAHALLSALQSHSKTLRCMFCRQIFSSDLEMQFHLATHTKQFRCPICSETFQIEFLLDRHMQTYHANTRTMNGETEDSADADKSVKKCSSSPNQKHVSPGRTSQKSSTGENNNVKKQHEVSQLNNCDICERNDFTTETELVAHRKLVHHTRNNAKNGVVSLHCAYCNENCKTRTELENHMKSHSQSSGVSGKHKCNICDEICPSAILLAEHKLTHCKVISGNCCTQCKASLSTEEQFYSHLVQHSNNNNAANQKTKSQVALPTPCVICRQTLISDVEVRIHSQFHLRNTLQQAEYHCSICFKMVDIQNVLVTKGSYMCSDCFSLPNDSQQNFHCTDCQFSFDSSVALEQHLDSVHNKTYTCIKCQASFDNERDVQIHVTTHLMSEGKNHECHLCRRLFSSALKLQAHLIEHTFAGCGGFTCYLCSAVFTAASGLQSHIIEHGLAARPYDCPQCNLKFFFRAELDNHSYSHLNRKPSTNTDLDISPKAYYVSLNGKFDPSNNGDLSKYYIKDHKNKKIQEVDEKPIVKEEPADEEDKKEEYVEVDFPSTSTKFKNEQNVDVEESSTLENGEIPKATSDSNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01105043;
90% Identity: iTF_00767522;
80% Identity: -