Hruf059839.1
Basic Information
- Insect
- Harpalus rufipes
- Gene Symbol
- -
- Assembly
- GCA_951394225.1
- Location
- OX596290.1:22495351-22496664[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.2e-06 0.00026 23.1 1.1 2 23 77 98 76 98 0.97 2 9 5.3 1.2e+03 2.2 0.8 1 8 104 111 104 125 0.69 3 9 0.00034 0.074 15.4 3.7 1 23 132 154 132 154 0.98 4 9 4.1e-06 0.00089 21.4 1.1 1 23 169 192 169 192 0.97 5 9 3.5e-06 0.00076 21.6 3.7 1 23 198 220 198 220 0.98 6 9 0.00011 0.025 16.9 1.8 1 23 226 248 226 248 0.98 7 9 1.5e-06 0.00032 22.8 2.2 1 23 259 281 259 281 0.98 8 9 0.00017 0.036 16.3 4.4 1 23 287 309 287 309 0.97 9 9 8.6e-06 0.0019 20.4 3.6 2 23 334 355 333 355 0.97
Sequence Information
- Coding Sequence
- ATGGAAGACGTTACTGTTAAAGAAGAGTGTGAAGAACTCAGTGAAAGTGTGACTCAAAATGAAACGAAACCAGAACGCGaagagaatataatattaaaaacaaacaatcaTGGATTTGAAGAAAttcttattaaagaagaaccggaTAGTAACAATCTGATTgaggaaaattttattaaagaagaaccagACTCTGAAGATAGCAacaaacagttaaaaaataaaaaacagtgtCCTAAGtgtggtaaaatattttcaaggcTAAGAAATATGAAAGCACATTTATATACACATAGTGAAATAAGAACATATCACTGTAAGTTATGTGATAAATGGTTGAAAAAAAACTCTGTAGATAATCATATGGCGATTCATGCTGGTAACAGAGTAAGACATGAATGTTCTATTTGTCATAAGTCGTATGTATGGAAAAGAAGTCTGAACATACATTTAAGAACCCATAGCACTGACTCTGCGACTTGCACTGATCAGGAAAGAGAAAAATATAAGTGTCATATTTGTGGTAATAACTTTTCAGCGTCAGGTAATTTgaacaaacatttgaaattagtacatagtaaaataaaagattttcgCTGTAATTTGTGTAACAAATcgtttacagaaaaatatagtcTGAAATACCACATGACGAGCCATATTGGCAAAAAAGAATTTGAATGTAATATATGTCACCAATTGTttccaaatataaataatttaaagtatcaTTTAAACACTCATGTCACTAATGATGATGACAAGACAAAGGATTTTCAATGTTCGCTATGTAACAAATCATTTACCAGAAAAGAAAGTTATGAGTATCACATGAACGCTCATAAAGGTATAAAACTATTTCAATGTCAAACATGTCATAAATCTTTTTCACAGAGAAGAGCCCTGAGCTTACATTCAAAGTTACATACATCGAGCGATCGCGAAGATACATGCACATCTACTAGACCTAAAATTCGTAAGGAAGATACAAAAGATCTTGAGTGCCCGAAATGTCAAAAGTCGTTTACCGTGAAAAGAtacctacataaacatttaaaaatgcatttattggATGATCAAAAGACACTTACTAACAATCAAATGAACGCAAACAGTACTGATTCGGTGAATGACAATAATTTGACagtagaaaatattgaagaCATTTTTGTTAAAGAAGAACACGAGCTAAtgagtaataataaatttgaagaaactcTCATTAAAGAAGAACCGAAGGAAATCAGCTACATGGACTCTGAAGACTGCAACAACcagaaagaaaacaaaaataatgacgATGTGCCTATATGA
- Protein Sequence
- MEDVTVKEECEELSESVTQNETKPEREENIILKTNNHGFEEILIKEEPDSNNLIEENFIKEEPDSEDSNKQLKNKKQCPKCGKIFSRLRNMKAHLYTHSEIRTYHCKLCDKWLKKNSVDNHMAIHAGNRVRHECSICHKSYVWKRSLNIHLRTHSTDSATCTDQEREKYKCHICGNNFSASGNLNKHLKLVHSKIKDFRCNLCNKSFTEKYSLKYHMTSHIGKKEFECNICHQLFPNINNLKYHLNTHVTNDDDKTKDFQCSLCNKSFTRKESYEYHMNAHKGIKLFQCQTCHKSFSQRRALSLHSKLHTSSDREDTCTSTRPKIRKEDTKDLECPKCQKSFTVKRYLHKHLKMHLLDDQKTLTNNQMNANSTDSVNDNNLTVENIEDIFVKEEHELMSNNKFEETLIKEEPKEISYMDSEDCNNQKENKNNDDVPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -