Basic Information

Insect: Harpalus rufipes
Gene Symbol: -
Assembly: GCA_951394225.1
Location: OX596286.1:31247239-31250571[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.081 18 7.9 0.2 2 23 239 261 238 261 0.94

2 10 0.00089 0.19 14.0 1.2 1 23 267 289 267 289 0.98

3 10 0.0068 1.5 11.3 3.3 1 23 295 317 295 317 0.97

4 10 1.9e-06 0.00042 22.4 0.8 1 23 323 345 323 345 0.98

5 10 2.8e-06 0.00062 21.9 0.2 1 23 354 376 354 376 0.98

6 10 4.2e-08 9.2e-06 27.7 0.5 1 23 382 404 382 404 0.99

7 10 4.8e-05 0.011 18.0 0.8 1 23 410 432 410 432 0.96

8 10 4.7e-05 0.01 18.1 3.3 1 23 438 460 438 460 0.98

9 10 9.5e-05 0.021 17.1 5.1 1 23 466 488 466 488 0.98

10 10 8.9e-05 0.02 17.2 6.2 1 23 494 517 494 517 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.081	18	7.9	0.2	2	23	239	261	238	261	0.94
2	10	0.00089	0.19	14.0	1.2	1	23	267	289	267	289	0.98
3	10	0.0068	1.5	11.3	3.3	1	23	295	317	295	317	0.97
4	10	1.9e-06	0.00042	22.4	0.8	1	23	323	345	323	345	0.98
5	10	2.8e-06	0.00062	21.9	0.2	1	23	354	376	354	376	0.98
6	10	4.2e-08	9.2e-06	27.7	0.5	1	23	382	404	382	404	0.99
7	10	4.8e-05	0.011	18.0	0.8	1	23	410	432	410	432	0.96
8	10	4.7e-05	0.01	18.1	3.3	1	23	438	460	438	460	0.98
9	10	9.5e-05	0.021	17.1	5.1	1	23	466	488	466	488	0.98
10	10	8.9e-05	0.02	17.2	6.2	1	23	494	517	494	517	0.98

Sequence Information

Coding Sequence: ATGGGCGAAGAGGATTTTTGTCGTCTGTGCGCTGTAACAACACCTACCACTGATCTCGTAAAAATAACAGACGAGCATTGGGTTAAGGAAGAGTTGGATACAAAAATCACACAATTTttccaaattaaaatattacccACAGACAAACTTCCTAAATGTATATGTTCCAAGTGCTGTGAAAAGGTTAAACGCACTTGGgaatttaatgaaaaagtaCAACAGGCACAAGAAACCTTAAGATCTGTGTTAGAGGAGGAACCGACAGCTGATGCCGTGGTAGATTATGATAGCgaaacaattttaaatcaaataacaaTGAAATCTGAAAAACGAGACACAGAAAACAACAATCCTCCCCCTGTTGAGTTCGTTGAGTGTATACtcaatgaaaaaaataacacaGATTTAAaacCAGAAATCTCTGAAGATGAAGAGGACGCCGAAtcagaaaatttatttgaagatgATCAAAATGACGAAGATTTTGATGTTAAAAGACAAAGAAAATTAGTAAAACATAGAAATGGAACTGGGAAACGAAAACCGGGACGACCAAAAagCCGTAAAAAACGGAGAAAACCAGGTAATGAAACTGTCATAGAGAGTGACGACGATAATCTATCTGTGCTGTCTGAGTCAAACGATGCAGTTAAAAGTGAGGACGGTAGTCTGATATTACGAACTCCGTTAGAAGCATGGGATTCGTACCCATGGATGTGTGCAAGTTGTAACGAAAAATTAAACACAGCAATGGATCTTCGAAGTCATTACCAATCTATACATAAACAATTACCAAAATATATATGTGTAGAATGTCCTAAAATTTATACTAAGTATCACGGTTTTGTTACACACGTTAGAACGCATCGGCACCATTTACGGTTTTGcTGCGATgcatgtaataaatttttcgCAAATAGAAAAGTATTGGAAACGCATAGATCAACACATTACGACTCGCGTCCATTCGTTTGTACAACTTGTGGTAAAACTTTCCGAATGCAAAGCGCGTTATACGTTCACGAAAGATCGCATTTACCGCTCGAAGTTAAGAATAAGTATCCCTGTGATCAGTGCCCAAAAAGGTTTGGAACGAAACCAAACTTAATGGCACATAAAAGAATCCATACTGGAATCAGAGACTACACTTGTGATCAGTGTGGCAAGAGTTTTATCCAAAAAGGAAATTTGGATAACCACATGCTTACACATATCGCAGCTAGGCCGTATAGTTGCGAAACTTGCGGAAAAGCttTTAAGACATTAATGAGACTGAAAAAACATGGAAGTGTTCATAGTGGTTTAAAACCACATCAATGCGATGTTTGTGGACGGCAATTTCGAGAACGAGGAACTTTGAAAGAACATCACAGAATTCATACTGGAGCTATGCCATTTACTTGCGAGTTTTGTGGGAAATGTTTTAGGTTTAAAGGAGTGCTTACCaCTCATCGAAGGCAACACACAGGCGAACGCCCCTACTCTTGCCAAGAATGCCAACACCATTTTACCAACTGGCCTAACTATAACAAACACATGAAGCGAAGACACGGAATTAATACCAGCGTAACAACCCGCAAGCCACAATCCATTCCTCCTACGGGGATGCCTCATCGCAATCCTCCAGGTACCGTGGTGGCTCCAACTGGCCAAGTTTTAGTTATACAGGATTCCAATTCAGGCCAAAATCAGACGTATGTTGAGCCTGAAACGCAAATAGTCGCACAGAATGTGATAAACACGCCCAGAAACTCCACAACGACAAATATATCGGCACCGTTGGTTAATGTAAATGTACAGCCTGCGCATTTAACTATGCAGAATTATTACATGTATATGTATCAGTGA
Protein Sequence: MGEEDFCRLCAVTTPTTDLVKITDEHWVKEELDTKITQFFQIKILPTDKLPKCICSKCCEKVKRTWEFNEKVQQAQETLRSVLEEEPTADAVVDYDSETILNQITMKSEKRDTENNNPPPVEFVECILNEKNNTDLKPEISEDEEDAESENLFEDDQNDEDFDVKRQRKLVKHRNGTGKRKPGRPKSRKKRRKPGNETVIESDDDNLSVLSESNDAVKSEDGSLILRTPLEAWDSYPWMCASCNEKLNTAMDLRSHYQSIHKQLPKYICVECPKIYTKYHGFVTHVRTHRHHLRFCCDACNKFFANRKVLETHRSTHYDSRPFVCTTCGKTFRMQSALYVHERSHLPLEVKNKYPCDQCPKRFGTKPNLMAHKRIHTGIRDYTCDQCGKSFIQKGNLDNHMLTHIAARPYSCETCGKAFKTLMRLKKHGSVHSGLKPHQCDVCGRQFRERGTLKEHHRIHTGAMPFTCEFCGKCFRFKGVLTTHRRQHTGERPYSCQECQHHFTNWPNYNKHMKRRHGINTSVTTRKPQSIPPTGMPHRNPPGTVVAPTGQVLVIQDSNSGQNQTYVEPETQIVAQNVINTPRNSTTTNISAPLVNVNVQPAHLTMQNYYMYMYQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01105017;
90% Identity: iTF_01105017;
80% Identity: -