Basic Information

Insect: Harpalus rufipes
Gene Symbol: -
Assembly: GCA_951394225.1
Location: OX596287.1:3711860-3712795[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00027 0.059 15.7 0.7 1 23 83 105 83 105 0.99

2 8 1e-06 0.00022 23.3 6.9 1 23 111 133 111 133 0.97

3 8 4.1e-06 0.0009 21.4 2.5 1 23 139 161 139 161 0.98

4 8 4.1e-07 9e-05 24.5 1.0 1 23 167 189 167 189 0.97

5 8 0.02 4.5 9.8 5.5 1 23 195 217 195 217 0.98

6 8 1.5e-05 0.0034 19.6 3.5 1 23 227 249 227 249 0.98

7 8 2.2e-06 0.00047 22.3 3.7 1 23 255 277 255 277 0.99

8 8 5.8e-06 0.0013 20.9 2.2 1 23 283 306 283 306 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00027	0.059	15.7	0.7	1	23	83	105	83	105	0.99
2	8	1e-06	0.00022	23.3	6.9	1	23	111	133	111	133	0.97
3	8	4.1e-06	0.0009	21.4	2.5	1	23	139	161	139	161	0.98
4	8	4.1e-07	9e-05	24.5	1.0	1	23	167	189	167	189	0.97
5	8	0.02	4.5	9.8	5.5	1	23	195	217	195	217	0.98
6	8	1.5e-05	0.0034	19.6	3.5	1	23	227	249	227	249	0.98
7	8	2.2e-06	0.00047	22.3	3.7	1	23	255	277	255	277	0.99
8	8	5.8e-06	0.0013	20.9	2.2	1	23	283	306	283	306	0.97

Sequence Information

Coding Sequence: atggCGGAGCCGTATGGTTCACCAGACATTCACAATTCTAACACCGAGGACAGTACTAATATAGAAGAAACAAAAGTTCctaatattgaagaaatataCATCAAAGAAGAACCTGTAGAAGGAACCACCAGTGATAGTGATTCTTTGGATGAAAATATTGATAACCTCGAATTTAATAACAGTGCGCAAGATGACATAATCAAAAAAGACAGTTCAATCGATTCAGAAACTACAAGTTCTCAAATTTACAAGTGTTCCAAGTGTGATTTGAGTTTTCCATGGCAAGCTTGGTTAAAAACCCATTCAAAAACTCACAATAAATCCCTCCAACATCCATGTACAGtatgtaacaaacattttactCAAAAATTCAATTTGCGGCAACATATGAAAACGCACACAGGCACGAAAGATTTCGAGTGTACCATTTGCGGGAAAAAATCTACAACCAAACAACAGATGAAATACCATATGCAGACACACACTGGAATCAAAGAATTTCAATGTaacatatgtaataaattatttacaagaaATGAAACGTTAAAAAGACACATAGAAGGCCATTCTGGCAAGAAGGAATTCCAATGTCCAATATGCCTGAAATGGTTCACGCAAAAACATCACATGGTTTACCACAAACAAAGACATACTCATCCTGATAGTTCGCTGAAGAAATTTAAGTGTAATTtatgtgaaaaaaaattctttcgaccACAACACCTCAAGGACCATGTGGAAACTCACATTGATACAAAGGAGTTTAAATGTTCTTTGTGTAGTAAATTGTTCTCGCGGAGACCTTACTTAAAGAAACATATGAAAACTCACACAGAATTGAAGGAATTCCAGTGTTCTATTTGTGATAAACTGTTTTCACAAAATTCGTATTTGTTGCAACATTATTCGAGAAAGCATAATAAAAATACTACGTAG
Protein Sequence: MAEPYGSPDIHNSNTEDSTNIEETKVPNIEEIYIKEEPVEGTTSDSDSLDENIDNLEFNNSAQDDIIKKDSSIDSETTSSQIYKCSKCDLSFPWQAWLKTHSKTHNKSLQHPCTVCNKHFTQKFNLRQHMKTHTGTKDFECTICGKKSTTKQQMKYHMQTHTGIKEFQCNICNKLFTRNETLKRHIEGHSGKKEFQCPICLKWFTQKHHMVYHKQRHTHPDSSLKKFKCNLCEKKFFRPQHLKDHVETHIDTKEFKCSLCSKLFSRRPYLKKHMKTHTELKEFQCSICDKLFSQNSYLLQHYSRKHNKNTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01105006;
90% Identity: -
80% Identity: -