Hruf029610.1
Basic Information
- Insect
- Harpalus rufipes
- Gene Symbol
- -
- Assembly
- GCA_951394225.1
- Location
- OX596280.1:40435301-40439680[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.6e-05 0.019 17.2 1.7 1 23 272 295 272 295 0.95 2 13 3.3e-05 0.0072 18.5 2.4 1 23 398 420 398 420 0.98 3 13 0.019 4.2 9.8 2.0 1 19 424 442 424 442 0.98 4 13 2.7e-05 0.0059 18.8 2.5 1 23 453 475 453 475 0.96 5 13 0.046 10 8.6 3.9 1 19 479 497 479 500 0.88 6 13 0.00029 0.064 15.6 5.5 1 23 510 533 510 533 0.97 7 13 0.00043 0.093 15.0 0.1 2 23 546 567 545 567 0.97 8 13 1.2e-05 0.0026 19.9 1.0 1 23 572 594 572 594 0.98 9 13 0.00022 0.048 16.0 2.1 2 23 600 621 600 621 0.95 10 13 1e-05 0.0022 20.2 1.1 1 23 626 649 626 649 0.97 11 13 2.3e-06 0.0005 22.2 0.4 3 23 656 677 654 677 0.96 12 13 0.0046 0.99 11.8 2.2 1 23 682 705 682 705 0.96 13 13 0.011 2.4 10.6 2.9 1 23 710 733 710 733 0.97
Sequence Information
- Coding Sequence
- atggaaatggatTTAACGGCGGATGAAGGATTTAGCgtcgattttataaataaagaaaataattttaatgttccAAATATAACAGgcTGTTGTGTTTGTACTGGGGATCATGAAACCGAAAAGTGCtcaatatttgataatttaatacataTACCAGATACCAAAGTATTACCCAGAGCATTGTTATCTTTACCTACTAGTTTGAAAGTAGAAACTCTTTCCGATGGTACTAACACAGTAATAGCCCAAGAAATTTTCAGTAAAGGGACACAGTTTGGTCCATATCAAGCtgaaaaattttattctttaaatccGTTCgataattttcctataaaagTTTTTGGAACTTCGGAAAATATTACACCAGACTGCTATCTTGATTCTAGAAACAAGGAGAAATGTAATTGGATGTGTTACATTCCTCCAGCTAACAACTTtgaagaacaaaatttaatttgttaccagattaAACTAGAGATTTTCTTTTCTGTTACCCGTGATATTCAACCCGGAGATCATCTAAAAGTTTGGTACTCAGCTTATTATGCGGCAAAAATTGGATCTGAAATTCTTACACCTCAAGTAAAAATAGATGGTTCGTATGTAACAATTTTTATGGGGTATATTAAGAATTTATATGAACTTACAGAAGCCGAAATAAAGCAAAATTTAGTAGAAACCTTACCTGCAAAAAAATTGGGAGCAATTGAAAGAGAAAATTGGTGTTGTAAAATGTGTAGTcatattgaaacaaatgttgtaaaatttgcccaacatttacaaaaacattattcaaaaataataaagaattttttcacATGCAATGTTTGCAATAAAGGATTTAGTACtgaaagaacattaaatttgcATAGAAAATTTGAACATATagttttatcaaattatagacCAAAcgatatacataattttgttaatggaAAATCGTCAGAAACAccgaaaaataatttacctgaACCTTCTTTACCTCCACCTACAGAAAATTCAGTGTCTGATACAGATCAGTTATTAGATCAATTAGGATTATCAAATGATCTAAATGATGCGGAAACATTGAGGGCACTATTGTGCGATGATAATACTAAAGCTAGCAAAACTGCCCAAGAGAAAAGTATTGCAGACTTCAGTTTAGAATTGGTTGAAAGTAATGAAACTGTGCCGAAGTTACAACCACCCTATTTCTGTGATATTTGTAATAGATTATTTACcgatttaagaaatttattcaGACATTTAAAGAAACATGCAGGAGAATATACTTGCGTACATTGTTTAatgGTGTTCAgtcgaaaagaaaattatttacatcatcCGTGTTGCACTGCcgataaattaaacaaatttaattgttccttttgtaacaaaattttctatcaaAAGAAATACCTAGAAAGACATATGCtaggacatttaaaaaaatatgaatgtgAAAAATGTGGAAAAAAGTATAAATCTAAATATGATAAAGATAATCACAATTGTTCATCAATTCCAAATTCTCagaaacaaatatattcttGTAGTGAATGTGACAAACAATTTAATATGAAACGTTATCTTCAAAAACATGTTAAAAAATGTCacgaaaacaaagaaaaaaatcaagcTGAAAATCCAGTTATGTGTGAAATATGTGCAAAGCCTTATCAATTTGCTAATTCTTTAAAAGTACACATGAGAACACATGGTGAACCAAAGTACACATGTAGAATATGCGACAAAAAATTCTATAGAATAGATGGTTTAAATAGACACGTACAAAGTCATAATGGAGATATGGAAGTTTGTGACATATGCAGTAAAAAGTTTAAAACTAAGAGAACACTGAGGGAGCATAAACTGCTGCACAGCAGTACAAGGTTTTCTTGTAATGAATGTGATAAACAATATATATCAAAACGAAATTTAATAGTTCATCAACAGAAGAGTCATACTGAAAATCCTGTAAATTGCCCAGAATgtggtaaaaaatttaaaaataattttcttcttgTAGAACATCAAAAAACAGTTCACACATCCGAAACTTTTAAGTGTTATTcctgtagtaaaatattttcattacagCGTTTATTAGCGCGACATACAAAACTTTACCACGATGGTAAATGTTTTTCTTGTCAATATTGTCAGAAAAAATATCAAACTATATATTTGATTCGTGACCATATGAAAAAAAGTCACTTTGAATTAAAAGACGAATGGACTAAACCCGGAGTACTAGAAAACATGCAACAAAGTACTGAGACAGAAAATACAACCAATTGCGAACAAGTTACGGATAATTCTCAAGAACCAGCAGAAGTTTTATTAAGTATTCCAAAAGTAAATAAAGAAGTTGGGAAAAGTGTATATATTATGGAGAATggaaaagttgaaatttcaagtCCGAAGAAAAAATCAAGTGATATGACAATAGTAGAAGAAAAGGAAGTGTTACTTAGCTTGCCTGAAACTACACAAAATTTAGcagaaactaataaaattttagaaaatgttGGTATTAAAAATACACTTTCTGACGTAGAACCTTGTAATCCCAGTGAAAATAAGTCTTCTTCGCCAAATGATTTAATATTACTCTCAAATAATAGAGGAAGAAATTTAAATCAACGAAATCGAAACATTGATCAACAATTTGTACTATCAGTGGCTCCTACTCCAGCAAATTTaggaaaaaatacaattatttttccaACTAATGTGATTCAACCACAACAACAAGGaaatttaatgatttattttttacaacaagtaaaaaaataa
- Protein Sequence
- MEMDLTADEGFSVDFINKENNFNVPNITGCCVCTGDHETEKCSIFDNLIHIPDTKVLPRALLSLPTSLKVETLSDGTNTVIAQEIFSKGTQFGPYQAEKFYSLNPFDNFPIKVFGTSENITPDCYLDSRNKEKCNWMCYIPPANNFEEQNLICYQIKLEIFFSVTRDIQPGDHLKVWYSAYYAAKIGSEILTPQVKIDGSYVTIFMGYIKNLYELTEAEIKQNLVETLPAKKLGAIERENWCCKMCSHIETNVVKFAQHLQKHYSKIIKNFFTCNVCNKGFSTERTLNLHRKFEHIVLSNYRPNDIHNFVNGKSSETPKNNLPEPSLPPPTENSVSDTDQLLDQLGLSNDLNDAETLRALLCDDNTKASKTAQEKSIADFSLELVESNETVPKLQPPYFCDICNRLFTDLRNLFRHLKKHAGEYTCVHCLMVFSRKENYLHHPCCTADKLNKFNCSFCNKIFYQKKYLERHMLGHLKKYECEKCGKKYKSKYDKDNHNCSSIPNSQKQIYSCSECDKQFNMKRYLQKHVKKCHENKEKNQAENPVMCEICAKPYQFANSLKVHMRTHGEPKYTCRICDKKFYRIDGLNRHVQSHNGDMEVCDICSKKFKTKRTLREHKLLHSSTRFSCNECDKQYISKRNLIVHQQKSHTENPVNCPECGKKFKNNFLLVEHQKTVHTSETFKCYSCSKIFSLQRLLARHTKLYHDGKCFSCQYCQKKYQTIYLIRDHMKKSHFELKDEWTKPGVLENMQQSTETENTTNCEQVTDNSQEPAEVLLSIPKVNKEVGKSVYIMENGKVEISSPKKKSSDMTIVEEKEVLLSLPETTQNLAETNKILENVGIKNTLSDVEPCNPSENKSSSPNDLILLSNNRGRNLNQRNRNIDQQFVLSVAPTPANLGKNTIIFPTNVIQPQQQGNLMIYFLQQVKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -