Hruf061750.2
Basic Information
- Insect
- Harpalus rufipes
- Gene Symbol
- -
- Assembly
- GCA_951394225.1
- Location
- OX596292.1:4395976-4405590[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 7.5 1.6e+03 1.7 0.4 1 23 99 122 99 122 0.86 2 17 1.1 2.3e+02 4.4 1.5 1 23 125 148 125 148 0.94 3 17 0.37 81 5.8 0.3 1 23 281 304 281 304 0.94 4 17 1.7 3.8e+02 3.7 0.8 2 23 385 407 384 407 0.94 5 17 0.00015 0.032 16.5 0.7 2 23 417 438 416 438 0.97 6 17 0.07 15 8.1 1.9 1 23 448 471 448 471 0.95 7 17 0.012 2.6 10.5 1.1 3 23 513 534 512 534 0.94 8 17 0.0007 0.15 14.4 1.9 1 23 541 564 541 564 0.97 9 17 6.7e-05 0.015 17.6 0.5 1 23 570 592 570 592 0.98 10 17 2.2e-05 0.0047 19.1 0.3 3 23 600 620 598 620 0.96 11 17 1.8e-08 3.9e-06 28.8 4.3 1 23 625 647 625 647 0.98 12 17 0.015 3.2 10.2 5.5 1 23 653 675 653 675 0.98 13 17 0.0001 0.022 17.0 6.4 2 23 682 703 681 703 0.96 14 17 2.2e-05 0.0047 19.1 0.8 3 23 711 731 709 731 0.96 15 17 0.00025 0.055 15.8 0.8 6 23 741 759 739 759 0.97 16 17 4.3e-05 0.0094 18.2 0.3 1 23 766 788 766 788 0.98 17 17 0.0034 0.75 12.2 0.9 2 23 795 817 794 817 0.94
Sequence Information
- Coding Sequence
- ATGGAGTCTACAGAAATTCAAGAAAATCCTGCGTTACGTCTAAACAAAATTCCAATTCATAGTAGATTAATGTCAACAGGTGTCAAAAAACCTCGaattcgaaataaaaatttgaacatCGATTACGAATTTTTAAACACTGATTCTAGCCAATCAACAGACGATATTGTTCCTTTGCAAgaaccagaaaaaaaattaactttaattgAACGCGCTGTTGGGTATTTCAATGCTGAAAATGATAAATTGGCTCAAAATTCGGCCTtgaatttatctataaataacGGGCCGCCATTTATATGTACAGTTTGCGACAATTGGTTTTATATGGGGTCGAAATTAAAActtcattatattttaaaccacAATTTATTTCATTGCGAGGTGTgtagtattttatttgaaacaaatgatgaaaaaaatttGCATACTTCAAGTTATCACCAGCCGATATTTTGCgaaatatgtcaaaattataaagaaaatatacaaattttattaaaacattacgAATCCGATCATGATAGCTGCACATGTCCATTTTGTGATTATGACGATTTTTACCGCGAAATCAACgaacaaataaaaacagaagACACGCAAACTAAAGTGAATCCATTCGTACCGGAAGTTAAGATAAAAGTCGAACCGCGCGAAATACAAAACTCTGATGACGACGACGACCAAATATCGGCAGATGAGGATGATCAACAACCAAaattagtcaaaaaatttgttGATTATTCTTATTTACAAGATGATATTCAAAGTGATATCGATTACGACGAaactgaaataataataaacagcgATTCAGAATTAGAAGATGAAAATGTCGAATTTATTTGCGAATTTTGCGATCAAAAAGAGGCAAAATTGATCAATTTGACGAAACACATAGAatcaaaacataaatttaaggttaaactaaaaaaaatcaactgtaaatattgtaaaaatgaatCCATCAGCTACAAAACACACTCGAACCATCTTGTTGAGCACCACGGCGCCGAAAATTTCGACTTTTCGAAAGAGATTTTCAACTGTACATGCGAAAATTATAAAGTTGTTCATTCTCTCGCTAGATGGCACGTTTTGACAGTTCACAATGGCGACCTTCAACGATATAATGTTGAAGATATTGGCCTCAAATGCAGATTTTGCGAGAAATATTTTTGGGAAAGAAACGAACTGAATGACCACGAAATGAAAGAACATTTTAACAACCATATACAGGATTTTCAGAAATGCAGCCagtgtgatgaaatatttagtaGTCAGAAACTTCTAGCGGTACATTCCAAAACCCATGATTTTCCCGAATATTCAAACTTGATCTACAAATGCTTAATTTGCTATTTCGTTTATCCGAAACTAAGTTTACTCCGCGAACATTTTCACTCCGAACATCCGAACTCAAAGATTTTCAAATGTCCGATTGACGAATGCGAAAAACTTtgcaagaagaaaaaatatatgatttgcCATCTTCAACGACCACACGAAAGAGATTCGAAGGAGATGGAGGCTTTTTGTGATGTCTGCGGCaagaaatttaaaagttttaaagcCGCTACGATTCATAAATTGATGAAACATCAAAGGGACAGAGCAGGGTTTCAGTGTAGAATTTGTAATGAAAGATTTACAACCAGTGAACAGAGAAAATTACACTATACAACAGCCCATCCGGGTCAGTTGGCTTACAATTGTCTTGAATGCGGCAAAGGATTCATAAGTAAATCAGGATTGTATGGTCACAAAAAAACACACCAGGAAAACAACAATATGATATGTCCTTATTGTAGTAAAGAATTTTCAAGACGCGATTCATACAATgaacatttattaattcatattggTCCCAGACATCAATGTCCACATTGTCCAAAATCATTTACGCAAAGATCAAATTTAACAAGACATGTTAGGATTCACACTGGCGCGAAACCCTATCAATGCTGTTATTGCGAAAAGAGATTCAGCGACCGTGGGGCATGCAGATCTCATGAACGAGTTCATACGAAAGAAGAACATTGTGAATGTTCTTATTGTGGCAAGAAATTcaccaaaaaacaaaaattgaagtACCATTTGCGGTATCATACCGGCGAAGgtctGCTAGACTGTGAAACTTGCGggaaacaattttcaaacaCCTACTCATTGAATGAACACAAACGGATTCATAATTCTGATACTTTATTGATGTGCAGTTGTGGACGGGGCTTTTccacagaaaaatatttaaatagacACATGCAGACTGTCCATAAACAGTCagcaacaaaatatatttgtccAATATGTTTCAAACCGTTGTATCAAAAGTCTTCGTACAATGCGCATATAATGACGCATTCTGCTGTAAAACATGTTCGGTGTCTTCTCTGCAACAAGGAATACAACACTCGCAAAACAGTCAAACGGCACATTCAAGAAGAGCATAATTTACGCGGCAATCCAGAAATTATCAAACATATTTACCAGCTCACGCCTCAAGAGGCAGGATTAAACTTGCCTCCGGCTTCAGAAATGGCCATAAAAATTGGAAGCGATCAACAATTAATGAACATGGATGTTAGACAACTGCAAGAATTAGTTTCAACTAGTAGCGCATCTTTAGGGAAGAAAATTAAACCGGTAGACGGATTTTCCGACAAGTTTGAACAGGTTCAGATAAAAGAGGAACTTGTTTCGGATACGGAGAATAatatagaagaagaagaatctGATTCGGATGACGAAATTCCGCTCAGCGAGCgaaaatggaaaaagaaaaagaaataa
- Protein Sequence
- MESTEIQENPALRLNKIPIHSRLMSTGVKKPRIRNKNLNIDYEFLNTDSSQSTDDIVPLQEPEKKLTLIERAVGYFNAENDKLAQNSALNLSINNGPPFICTVCDNWFYMGSKLKLHYILNHNLFHCEVCSILFETNDEKNLHTSSYHQPIFCEICQNYKENIQILLKHYESDHDSCTCPFCDYDDFYREINEQIKTEDTQTKVNPFVPEVKIKVEPREIQNSDDDDDQISADEDDQQPKLVKKFVDYSYLQDDIQSDIDYDETEIIINSDSELEDENVEFICEFCDQKEAKLINLTKHIESKHKFKVKLKKINCKYCKNESISYKTHSNHLVEHHGAENFDFSKEIFNCTCENYKVVHSLARWHVLTVHNGDLQRYNVEDIGLKCRFCEKYFWERNELNDHEMKEHFNNHIQDFQKCSQCDEIFSSQKLLAVHSKTHDFPEYSNLIYKCLICYFVYPKLSLLREHFHSEHPNSKIFKCPIDECEKLCKKKKYMICHLQRPHERDSKEMEAFCDVCGKKFKSFKAATIHKLMKHQRDRAGFQCRICNERFTTSEQRKLHYTTAHPGQLAYNCLECGKGFISKSGLYGHKKTHQENNNMICPYCSKEFSRRDSYNEHLLIHIGPRHQCPHCPKSFTQRSNLTRHVRIHTGAKPYQCCYCEKRFSDRGACRSHERVHTKEEHCECSYCGKKFTKKQKLKYHLRYHTGEGLLDCETCGKQFSNTYSLNEHKRIHNSDTLLMCSCGRGFSTEKYLNRHMQTVHKQSATKYICPICFKPLYQKSSYNAHIMTHSAVKHVRCLLCNKEYNTRKTVKRHIQEEHNLRGNPEIIKHIYQLTPQEAGLNLPPASEMAIKIGSDQQLMNMDVRQLQELVSTSSASLGKKIKPVDGFSDKFEQVQIKEELVSDTENNIEEEESDSDDEIPLSERKWKKKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01104990;
- 90% Identity
- -
- 80% Identity
- -