Hruf049049.1
Basic Information
- Insect
- Harpalus rufipes
- Gene Symbol
- -
- Assembly
- GCA_951394225.1
- Location
- OX596286.1:35741284-35743158[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00033 0.072 15.4 1.6 1 23 181 204 181 204 0.93 2 12 0.0067 1.5 11.3 4.6 1 23 208 230 208 230 0.98 3 12 2.7e-05 0.0059 18.8 4.2 1 23 238 260 238 260 0.97 4 12 0.00026 0.058 15.7 2.0 1 23 266 288 266 288 0.98 5 12 7.2e-07 0.00016 23.8 0.6 1 23 297 319 297 319 0.97 6 12 5.2e-06 0.0011 21.1 0.5 1 23 325 347 325 347 0.95 7 12 0.0002 0.043 16.1 0.2 1 23 353 375 353 375 0.98 8 12 4.8e-05 0.01 18.0 1.7 1 23 381 403 381 403 0.98 9 12 0.00012 0.026 16.8 0.5 2 23 410 431 409 431 0.97 10 12 2e-06 0.00044 22.4 3.0 1 23 437 459 437 459 0.98 11 12 5.3e-07 0.00012 24.2 0.3 1 23 465 487 465 487 0.98 12 12 7.5e-07 0.00016 23.7 0.7 1 23 533 555 533 555 0.99
Sequence Information
- Coding Sequence
- ATGTTAATGTTTGATAATATACTACTGCGCAGCGAAACGTCTCACAACTTAAAAGTAGTGTTGGTTGCACGAGCACATGCAGAATATTTTATACCATTGATTTGTCTTCATGAATGTTATAAAGATGTAAACGAAACAATTCCGTTAAGCAGTATTGTGAGGAGATTAGCTCAGATTGAGatAGAACACGACGATGGTCTTCCAgaacaaatatgtgaaaattgtatgGAGGAATTAAaacgaacatataaatttattacaatgatACAAGACTCTGATAAATCACTTCGTTCTGTAGAACTGTTGTATCCAATAAAATCTGAAGATTTTACAGATAAATTAGATAATGATACTAATATATACATAACTAGTGAAATAGAAGTAGAGGCAGAAGTTTGTCTTAAACTTGAACCAGAGTCAGTGGTAAGTAAAtttgataatgatgatgatgaaAATGTAGATGATCCCATGGATAATGGAGCAGAATCAGAAGACATGACTCAAGAACATGACTATAGTAAACGAGTAGTTGAAAGAAAGTATAGTTGTGATACTTGtgatgaagaatttaaaagtaaaaaaaagttaacTGAACATAAAAGCGAATCACAcgattttaaatatgaatgtaaTTTCTGTTGCAAAAAATTTCCAGTTCAAAGACATTTAACAGTACATTTGAGAGCACACCGCTCAGATGAGCAAAGACCCCACAAATGCCCAGAATGCGACAAAAAATATTCGTacgaataccaattaaaacaacatttgtttaaacattCAGAGGAAAAGCCATTTCCATGTACCAAATGCGAGAGAGGTTGCCTCACTGCGGAAAGTTTAAGACGACACATGAGGACTCATGATGAAAACTACGAGAAGCCAATCCACCCTTGTGAAGTGTGTGGAAAAACATTTTCCTATCCGAGTTTTCTTGCTGAACACATGAAGAATCATACCGGCGAGAAACCGTTTTTATGTTCGCTATGCGGAAAAGGTTTCCGCCAAAAAGGCGCTTTAGTTTATCATCAGAGGAGTCATCAAAATGTTCGACCATATATGTGCGATATCTGcaaaaattcttttgtttcCGCGGGAATTTTAAAGGTTCACATGAGGAGGCATACCGACGAAAGACCCTACGTTTGTGATATCTGCGACCGAGGATTTCGGCAGTCTTCTGATTGCAAGATCCACCGACGAATACATTTTGGAATAAAATTGGTAGAATGTAGtgtttgtaacaaaaaaatgtcaacAACAGGACAGTTGACTATTCATATGAGGATGCATACTGGCGAACGACCGTTTCCTTGCCATGTATGTTTGAAAAGATTTTCAACTAAATCAAAATTAGTCAAACATCTTCGTGTGCACACCGGCGAAAAGCCATATATCTGTAAGGTATGTGGTAAAGGATTTACCCAGTCGAGTTCATTAggaaatcatttaaaaattcatgatCGAGAAGGAAATAATATacccaaaaataaaaaagtaaatttaactattaatccTGGAGGAAATAATAACATAGctaaaaagaaaaaagtaaCGGTAACTGTTACTCCTGAAGAAGAAACACCGACAACACCATACTCTTGCGGTGAATGTGAGAAAACATTTAAACAACTTATAAACTTACAAATACATCTAAAAACTCATgctattttgaatgaaaataataatgaaaacatGGCTAACGtaatagaaaatgtaaaaacttaa
- Protein Sequence
- MLMFDNILLRSETSHNLKVVLVARAHAEYFIPLICLHECYKDVNETIPLSSIVRRLAQIEIEHDDGLPEQICENCMEELKRTYKFITMIQDSDKSLRSVELLYPIKSEDFTDKLDNDTNIYITSEIEVEAEVCLKLEPESVVSKFDNDDDENVDDPMDNGAESEDMTQEHDYSKRVVERKYSCDTCDEEFKSKKKLTEHKSESHDFKYECNFCCKKFPVQRHLTVHLRAHRSDEQRPHKCPECDKKYSYEYQLKQHLFKHSEEKPFPCTKCERGCLTAESLRRHMRTHDENYEKPIHPCEVCGKTFSYPSFLAEHMKNHTGEKPFLCSLCGKGFRQKGALVYHQRSHQNVRPYMCDICKNSFVSAGILKVHMRRHTDERPYVCDICDRGFRQSSDCKIHRRIHFGIKLVECSVCNKKMSTTGQLTIHMRMHTGERPFPCHVCLKRFSTKSKLVKHLRVHTGEKPYICKVCGKGFTQSSSLGNHLKIHDREGNNIPKNKKVNLTINPGGNNNIAKKKKVTVTVTPEEETPTTPYSCGECEKTFKQLINLQIHLKTHAILNENNNENMANVIENVKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -