Basic Information

Insect: Harpalus rufipes
Gene Symbol: -
Assembly: GCA_951394225.1
Location: OX596286.1:590381-592237[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 9e-07 0.0002 23.5 0.8 2 23 52 73 51 73 0.97

2 11 1.3e-07 2.8e-05 26.1 3.9 1 23 79 101 79 101 0.98

3 11 2.2e-06 0.00049 22.2 0.5 1 23 107 129 107 129 0.98

4 11 8.3e-05 0.018 17.3 3.8 1 23 272 294 272 294 0.98

5 11 3.9e-07 8.4e-05 24.6 0.7 1 23 300 322 300 322 0.99

6 11 0.00032 0.069 15.5 6.9 1 23 328 350 328 350 0.98

7 11 2e-06 0.00044 22.4 1.5 2 23 357 378 356 378 0.98

8 11 1.5e-05 0.0032 19.7 7.1 1 23 384 406 384 406 0.99

9 11 2.2e-07 4.8e-05 25.4 3.0 1 23 412 434 412 434 0.98

10 11 8.6e-06 0.0019 20.4 2.1 1 23 440 462 440 462 0.99

11 11 5.7e-06 0.0012 21.0 5.0 1 23 468 490 468 491 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	9e-07	0.0002	23.5	0.8	2	23	52	73	51	73	0.97
2	11	1.3e-07	2.8e-05	26.1	3.9	1	23	79	101	79	101	0.98
3	11	2.2e-06	0.00049	22.2	0.5	1	23	107	129	107	129	0.98
4	11	8.3e-05	0.018	17.3	3.8	1	23	272	294	272	294	0.98
5	11	3.9e-07	8.4e-05	24.6	0.7	1	23	300	322	300	322	0.99
6	11	0.00032	0.069	15.5	6.9	1	23	328	350	328	350	0.98
7	11	2e-06	0.00044	22.4	1.5	2	23	357	378	356	378	0.98
8	11	1.5e-05	0.0032	19.7	7.1	1	23	384	406	384	406	0.99
9	11	2.2e-07	4.8e-05	25.4	3.0	1	23	412	434	412	434	0.98
10	11	8.6e-06	0.0019	20.4	2.1	1	23	440	462	440	462	0.99
11	11	5.7e-06	0.0012	21.0	5.0	1	23	468	490	468	491	0.96

Sequence Information

Coding Sequence: ATGGACAATGAAAATCTTAAAACATTTGAAGAAACCAGTGAGGAAAACTGTGAAGAAAAACAAAGTGATAGTGATTTAAAAGTGGACGAAATTGTTGAAAAactaaaagaaaacaaaacgAAATCTGGTTCGGAAGATGACGCGGACGATTTGCGGTGCCCAATTTGCGGGAAGACTTTTCAATATAAATACGCTGTAAAACGACACATGAAATTACATTTAGGAATTAGAGATTTTAACTGTTCTTTATGTGATAAATCTTTTACTCAAAGTTATCATTTAAAACTGCACATGCGCATACATTTAGGTGTAAAAGATTTTCAGTGCAATATGTGCGGAAGAATATTCGGTCAAAAATCAAACTTAGACGaacatacaaaaatacatttagACAACCACGTTAAAACACATATGGAATAcaaagataaagaatttaaactaaaacaagATGGCCGCCAAGATTTCGCAATAAACGAAGAAGAATTAGaagaagaggacgaagaaaacGAATCCCTCGAAGAACCAGACGATCAAGAAGAACCCGAAGATCTCTCCAACTGCAAAATCAATTCCCCCGAAAATACAAAAGATGATTCCTCCATGGATTCAACCTCCAGCCGCATCGAACTCCGCATCCAAAAagaattatcaaaaaaagtCGAACAATTAATCCAACAAGAAGATGATCCAAATTCCAGAAAAGTTCCTCAACTCCTTCAGGACGAATCCACAACGCAAGaaaaatacgaaattttggaaaaatttctGAAGGAGgacaagaaaaacaaaaaaacaaaagaagaaacgCAGGAATATAATTGTGAATTGTGcaataagaaatttttatacaaaagtACTTTAAAACGACACATGAAAAACCATTCGGGCATTAAGGAATTTAAATGTGAAATTTGCCAAAAAGAATTCCCCAGAAAAGCGACGTTAGACCGACATATGAAAATCCACCTTGATATTAAAGACTTCGAATGTACAGTTTGTAGTAAAAAATTTTCACAAAGCCACCACTTAAAATTTCATATGAAGATCCATCTAAACATAAAAGACAATAAATGTACAGTTTGCGATAAAGAATTCGTCGAAAAAACGAGCCTAACGCGCCATATGAAATCCCATTTAGGAATCCGCGATTACGAATGCACCATTTGCAAAAAAAGATTCACTGAAAAGTGCCATTTGAAAAGCCACATGAAAATCCACCTAGGAATCAAAGATTTCGAATGCCAAATCTGCCATAAAAAATACTCCGACAATTCTAACCTAAAAGTGCACATGAAACTCCATCTTGGAATAAAAGACTATGAATGCTCATTATGTTACAAGCGATTCATAAACAATCAAAGTTTAAAACTTCACATGAAGAGCCATCTAGGGATAAAAGACTATGAATGTCCAATATGTCATAAAGAATTTGTAACGAAACAAACATTGAAAACGCATACGAAATCTCATCACCCGGAAATGTTAGAGGATGTGAAGTTGGAGCCCAGTGAGTCTCAAACGGGGTTTGATGATTTACCAGACACCGTACTAGAGCCGCAAACTGTTTTAGAACCGCAGAATGATTCGTCGAATGATGGTTCGTTACAAGTGCAACTCGAAACGACTTAA
Protein Sequence: MDNENLKTFEETSEENCEEKQSDSDLKVDEIVEKLKENKTKSGSEDDADDLRCPICGKTFQYKYAVKRHMKLHLGIRDFNCSLCDKSFTQSYHLKLHMRIHLGVKDFQCNMCGRIFGQKSNLDEHTKIHLDNHVKTHMEYKDKEFKLKQDGRQDFAINEEELEEEDEENESLEEPDDQEEPEDLSNCKINSPENTKDDSSMDSTSSRIELRIQKELSKKVEQLIQQEDDPNSRKVPQLLQDESTTQEKYEILEKFLKEDKKNKKTKEETQEYNCELCNKKFLYKSTLKRHMKNHSGIKEFKCEICQKEFPRKATLDRHMKIHLDIKDFECTVCSKKFSQSHHLKFHMKIHLNIKDNKCTVCDKEFVEKTSLTRHMKSHLGIRDYECTICKKRFTEKCHLKSHMKIHLGIKDFECQICHKKYSDNSNLKVHMKLHLGIKDYECSLCYKRFINNQSLKLHMKSHLGIKDYECPICHKEFVTKQTLKTHTKSHHPEMLEDVKLEPSESQTGFDDLPDTVLEPQTVLEPQNDSSNDGSLQVQLETT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00767443;
90% Identity: -
80% Identity: -