Hruf059837.1
Basic Information
- Insect
- Harpalus rufipes
- Gene Symbol
- -
- Assembly
- GCA_951394225.1
- Location
- OX596290.1:22476311-22484649[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 6.4 1.4e+03 1.9 3.0 1 19 45 62 45 63 0.68 2 23 0.0005 0.11 14.8 0.2 1 23 68 90 68 90 0.98 3 23 0.00044 0.096 15.0 4.5 1 23 116 138 116 138 0.98 4 23 0.096 21 7.7 2.0 2 23 284 305 283 305 0.95 5 23 0.00013 0.028 16.7 2.8 1 23 311 333 311 333 0.98 6 23 6.3e-07 0.00014 24.0 2.1 1 23 340 362 340 362 0.98 7 23 0.0065 1.4 11.3 0.5 2 23 379 400 378 400 0.95 8 23 4e-07 8.8e-05 24.6 3.5 1 23 406 428 406 428 0.99 9 23 8.6e-05 0.019 17.2 4.1 1 23 435 456 435 456 0.98 10 23 2.9e-05 0.0063 18.7 0.2 2 23 478 500 478 500 0.97 11 23 1.2e-05 0.0027 19.9 0.2 1 23 506 528 506 528 0.98 12 23 3.2e-05 0.0071 18.6 1.9 1 23 534 556 534 556 0.98 13 23 0.0014 0.3 13.4 2.9 1 23 583 605 583 605 0.98 14 23 0.013 2.8 10.4 2.3 2 23 741 762 740 762 0.95 15 23 0.00013 0.028 16.7 2.9 1 23 768 790 768 790 0.98 16 23 9.1e-06 0.002 20.3 2.4 1 23 797 819 797 819 0.96 17 23 0.56 1.2e+02 5.2 3.4 2 23 832 853 831 853 0.96 18 23 8.8e-06 0.0019 20.4 1.3 1 23 859 881 859 881 0.98 19 23 1.6e-06 0.00034 22.7 1.9 1 23 888 910 888 910 0.98 20 23 1e-05 0.0022 20.1 0.3 2 23 931 953 930 953 0.96 21 23 5.3e-06 0.0012 21.1 1.3 1 23 959 981 959 981 0.99 22 23 0.34 74 5.9 0.4 1 23 987 1009 987 1009 0.97 23 23 0.00038 0.083 15.2 3.3 1 23 1036 1058 1036 1058 0.98
Sequence Information
- Coding Sequence
- ATGGAATACATTTCTGTTAAAGAAGAGTGCGAAGAAACAAGCAATCATAGATTTGAAGAAAttcttattaaagaagaacctgCCCCTGAAGAAAGCAACAATTGTAATGAAGAAGAAAACTATGACGAGAAATATCAGTGTCCTATTTGcgAAAAATTTGGTCTGAAGTACCACATGACTACTCACACAGGCAAAAAAGAATTTGAGTGTGATATATGCCTTCAGTTATTTCCAAATAATAATGCCTTAAAGAATCATTTAAACACTCATATTGGAAGCGATTATGAAGGCCTGGCTAAACCTTTAGATGTTCGTAAACCGATCCATAAGGAAGGTGTAAACGATTTTGAATGCCCGAAATGTCATAAATTGTTTACcgttaaaaaatacttatataaacatttaaaactgcATTTATTGGATGATAACAATCAGACGCACACTGATTCGTCGAAGGACATTAGTTTTATAGTAGAAAACATTGAAGATATTTTTGTTAAAGAAGAACACGAGCTAGataaaaatatagaagaaataagtCAAGAGGGGCGCTCCACTTCGACCGGTTCCAATTGTgaaaagggcgaattcaaacgGTTTGTGGACTTGGGAAGCGACATGGAAAACATTTCTGTTAAAGTAGAATTTGAAGATACTCCCTGTGGAGATGACCTCAGTGACAGTGTAGTGCAGAGTGCAACGAATACAAATTCCGAagagaagatattaaaaactaataatcatCAATTTGTAGAAATTCGTATTATAGAAGAACCGGATAGTGACAATCTGATTGCGGAAAATTGTAATGAAGAAGAAAACTCCGAGATTTCTAATGATAAAAAAAGTCGGTGTCCTGAATGTGGTAAATATATACTGCGGTGTAATTTGAGAAAGCATTTAAGGTATATACATAAAGGAATCAAAAATTATCATTGTGATGTATGTAATAAATCGTTTACCGAGAGGGCTAGTTGGAAATACCACATGACGACTCATACCGGCCAAAAAGATAAATTTGAATGTTCCATTTGTGATAAGTCGTACACAAAGAAAAGTACATTAACAAGACATTTAAACAATCATACAACGACTTGCAGTAATCCTCGCAATTATCCAAAAAAAGAAAGAATCCCGTGTTCTATTTGTGGTAAAAGTGTACAGCACAATGGTTTGATAAAACATTTAAAGCGTTTACATAATGGAATCAAGGCTTATCGTTGTAAAGTGTGTAATAAATCGTTTAAAGAAAGTGCTAGCTTGAAACATCACATGCGAATTCATagggtcaaaaaaaaaaaatttgagtgTTCCATTTGTAATAAGTTTTAcacaaagaaaaatttaaaaagacaTCTAAAAAGGCATACAAATAATGACACAACAACAGATAACAATGCGTCTTGCAGTAATcagaataaagaaaaaaatgagtGTCCTGTTTGTGGTAAAATATTCACACTGAGAGAATATATGACAAAACATTTAAGATCGGTACATAATGGAATAGAAATATATCCGTGTAATTTATGTGATAAATCGTATGCCGAAAAGGCCAGTTTGGAAAACCATATGACAAGTCATGCTAGCATAAAAGAATTTGAGTGTGATATATGCCataaattatttccaaataataacgacttaaaatatcatttaaacacTCACGTTGGAAGCGATTGTGAAGGCAATCCGGCTACACCTTTAAAAATTGGTAAACCGATCCATAAGGACGGTATAACATATTATGAGTGCCCGAAATGTCATAAGTTGTTTATCGTCAAAAGATACTTATATAGCCATTTAAAATTGCATTCATTGGATCCGTCGAATAATTTGACAGTAGAAAACGTTCAAGATATTTTTGTTAAAGAAGAACACGAGCTAGATACAAATATAGaagaaataagtCAAGAGGGGCGTTTCACTTCGAACGGTTCCAATTGTGAAAAGAGCGAATTCAAACGGTTTGTGGACTTGGGAAGCGATATGGAAGACATTTCTGTTAAAGTAGAATTTGAAGATACTCCCTGTGGAGAAGACCTCAGTGACAGTGTAGTGCAGAGTGCAACGAATACAAAATCCGAagagaagatattaaaaactaataatcatcaatttgaagaaattattattaaagaagaaccggaTAGTGACAATCTGATTGCGGAAAATTGTAATGAAGAAGAAAACTCCGTGATTtctaataagaaaaaaaaacgttGTCCTGTTTGTGGTAAATTTATACAGCAGTGTAATTTGAGTAAACATTTAAGGTATATACATAAAGGAATCAAAAATTATCATTGTGATGTATGTAATAAATCGTTTACCGAGAGGGGTAGTTGGAAATACCACATGACGACTCATACCGGCCAAAAAGATAAATTTGAGTGTTCCATTTGTAATAAGACTTACACAAAGAAAAGTGGATTAAGAAAACATTTATACAATCATACAACGACTTGTAGTAATCCGAATAAAGAAAGAATCCAGTGTTCTATTTGTAGTAAATTTTTACAGCGAAATTGTTTGGCAAAACATTTAAAGCGTACTCATAATGGAATCAAGGCTTATCGTTGTAATTTGTGTAATAAATCGTTTACAGAAAGTGCAAGTTTGAAATATCACGTAAAAATTCATACCGGCAAAAGAGATAAATTTGAGTGTTCCATTTGTAATAAGTCTTACACAAAGAAAAGTGATTTAGCAAGACATTTTAATACGCATTCAAACAATGACACAACAGAAGATAGTGTGTCTTGCAGTAAttggaataataaaaaaagtgagTGTCCTGTTTGCGGTAAAATATTTCCAAAGACATCAAATatgaaaaaacatttaaattcgaTACATTATGGAATAAAAGATTATCGTTGTAATTTATGTGACAAATCGTATGCTGCAAAGGATACTTTGAAATATCATATGAGAAGTCATATTGGCAAAAAAGAATTTGAGTGTGATATATGCCTTCAGTTATTGCCAAATCATAATGccttaaaatatcatttaaacatTCATGTTGGAAGCGATTATGAAGGCAATCTGGCTAAACCTTTAAAAATTGGTAAACCAATCCAGAAGGacggtataaaatattttgagtgcCCGAAATGTCATAAGTTGTTTACCGTCAAAAATTACTTGtatacacatttaaaaatacattcatTGGATGATCAGATTCACGCAGATATTGATTCGCCGAAGGACAATAATTTGCCagtagaaaatattgaagataTTTTTGTTAAAGAAGAACACGAGCTAGATAAAAATATAGTAGAactaagtaataataaatatgaagaaattttcattaaagaaCCAAAGGATGTCAACTACATGGACTCTGAAATCTGCAACGATcagaaagaaaacaaaaataatgaatcttaa
- Protein Sequence
- MEYISVKEECEETSNHRFEEILIKEEPAPEESNNCNEEENYDEKYQCPICEKFGLKYHMTTHTGKKEFECDICLQLFPNNNALKNHLNTHIGSDYEGLAKPLDVRKPIHKEGVNDFECPKCHKLFTVKKYLYKHLKLHLLDDNNQTHTDSSKDISFIVENIEDIFVKEEHELDKNIEEISQEGRSTSTGSNCEKGEFKRFVDLGSDMENISVKVEFEDTPCGDDLSDSVVQSATNTNSEEKILKTNNHQFVEIRIIEEPDSDNLIAENCNEEENSEISNDKKSRCPECGKYILRCNLRKHLRYIHKGIKNYHCDVCNKSFTERASWKYHMTTHTGQKDKFECSICDKSYTKKSTLTRHLNNHTTTCSNPRNYPKKERIPCSICGKSVQHNGLIKHLKRLHNGIKAYRCKVCNKSFKESASLKHHMRIHRVKKKKFECSICNKFYTKKNLKRHLKRHTNNDTTTDNNASCSNQNKEKNECPVCGKIFTLREYMTKHLRSVHNGIEIYPCNLCDKSYAEKASLENHMTSHASIKEFECDICHKLFPNNNDLKYHLNTHVGSDCEGNPATPLKIGKPIHKDGITYYECPKCHKLFIVKRYLYSHLKLHSLDPSNNLTVENVQDIFVKEEHELDTNIEEISQEGRFTSNGSNCEKSEFKRFVDLGSDMEDISVKVEFEDTPCGEDLSDSVVQSATNTKSEEKILKTNNHQFEEIIIKEEPDSDNLIAENCNEEENSVISNKKKKRCPVCGKFIQQCNLSKHLRYIHKGIKNYHCDVCNKSFTERGSWKYHMTTHTGQKDKFECSICNKTYTKKSGLRKHLYNHTTTCSNPNKERIQCSICSKFLQRNCLAKHLKRTHNGIKAYRCNLCNKSFTESASLKYHVKIHTGKRDKFECSICNKSYTKKSDLARHFNTHSNNDTTEDSVSCSNWNNKKSECPVCGKIFPKTSNMKKHLNSIHYGIKDYRCNLCDKSYAAKDTLKYHMRSHIGKKEFECDICLQLLPNHNALKYHLNIHVGSDYEGNLAKPLKIGKPIQKDGIKYFECPKCHKLFTVKNYLYTHLKIHSLDDQIHADIDSPKDNNLPVENIEDIFVKEEHELDKNIVELSNNKYEEIFIKEPKDVNYMDSEICNDQKENKNNES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -