Hruf049047.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Harpalus rufipes
Gene Symbol
-
Assembly
GCA_951394225.1
Location
OX596286.1:35728851-35735827[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 4.3e-06 0.00094 21.3 2.2 1 23 165 187 165 187 0.98
2 20 9.6e-05 0.021 17.1 5.2 1 23 193 215 193 215 0.97
3 20 2.8e-06 0.0006 21.9 1.0 1 23 253 275 253 275 0.98
4 20 2.2e-05 0.0047 19.1 4.2 2 23 287 308 286 308 0.97
5 20 1.8e-05 0.0039 19.4 0.5 1 23 314 336 314 336 0.97
6 20 3.1e-07 6.7e-05 24.9 1.8 1 23 342 364 342 364 0.98
7 20 2e-05 0.0043 19.3 0.7 1 23 370 392 370 392 0.95
8 20 0.0003 0.066 15.5 0.2 3 23 400 420 398 420 0.96
9 20 2.8e-06 0.00061 21.9 2.9 1 23 426 448 426 448 0.98
10 20 0.00014 0.031 16.6 0.8 1 23 454 476 454 476 0.99
11 20 2.7e-05 0.0059 18.8 0.3 1 23 482 504 482 504 0.98
12 20 7.9e-07 0.00017 23.6 0.6 1 23 510 532 510 532 0.98
13 20 2e-05 0.0044 19.2 2.1 2 23 586 607 585 607 0.97
14 20 1.4e-07 3e-05 26.0 1.7 1 23 613 635 613 635 0.99
15 20 1.9e-07 4.2e-05 25.6 1.4 3 23 650 670 649 670 0.99
16 20 5.7e-05 0.013 17.8 0.7 1 23 676 698 676 698 0.98
17 20 2.1e-05 0.0045 19.2 1.2 1 23 704 726 704 726 0.98
18 20 6.3e-06 0.0014 20.8 2.8 1 23 732 754 732 754 0.98
19 20 4.3e-05 0.0093 18.2 1.4 3 23 762 782 760 782 0.95
20 20 0.00054 0.12 14.7 9.0 1 23 788 810 788 810 0.97

Sequence Information

Coding Sequence
ATGGAAGAACCAGCACTGTCTAAAATATGCAGGGCATGTTTGACAGAAGAAGGGGAAATGAAATCTGTTTTTGTTTCGGATGATAGATCTGGTTCACCTATACATTTAGCAGAAATGATCATGGCATACGCCTCTGTGCAGATTACCCTGGGTGATGGTTTACCAGATCAAATATGTTTATCTTGTGCGGATAAAGTCAGTAAAACTTATGTTTTTAAACAGTTGTGTGAAGATTCAGATGCCTTTCTGCGTGAAAGATTAGGAAGATCACTTTTATCGAAGAAAGACGCAGAGAACGTTATGGAAATAAATTCGGATGCTATAAGTATTGTTATAAAGCCAGAATTTGATTTGGAACAAGATCACGAATCAGATGATGACTTTGGTAATGATAACATTGAAACATTAGATGACGCTTTTCAGGATGATGATAAAAATAGTGACCGGGAAGACAATGATAGTGATTCGGATTACAGCCCTAAAAAATCGTCGTATAAATGTGAAGTATGTAAAAAAGCGTTTAATAAACAAAGtcttttaaataaacataagaGTATGCATTGTAATATTAGAGCACACATTTGTGATATTTGTAAAAGATGCTACACTCGAGCAGATCAATTGTTTCGGCATAAACTTACACACGCTGATGCTGTTCtcgataaaataaaattggaaGGTGATCTAATTGAAGCTAAGGAAGAAATAATTGAAACTGTGGAGTTAGAAGCTGAGGAGGGTGAGGATAAAGAAAAATACAACTGTGCAGTATGTGAAAAAGAATTTACCAAAAAAGAGAGTCTATCATCTCATATGCGAACCCATATGAAAGGCCAAAAAGAAAAGGATAAGGTCTTAGTATGCCATGTATGTTCCAAAAAATTCATGAAACCTAGCCACTTAACAcgacatttaaaaatacatgcaTCCGTTAAAGCCCATGTTTGCAACTTATGCAACAAGGGATTTGCCCGAGGTGAACAACTAATGAATCACATGAACGTCCATTCCGGCATTAAACCCCATGTTTGCAACGTTTGCAATAAAGGCTTCAATCAAATCAGCAATTTGAAGGATCACATGCGGACCCACAACGGCGAAAAACCATTTCTCTGTTCAACTTGCGGCAAGGGTTTCAATCAATTGGGAAATCTACGGCAGCATACAATTCGCCACAGTGGGATCAAAGCTCATTTATGTAGCATCTGCGGTAATGGATTCGCCAGCAAGGGAGAATTAGGTGCCCATTTGCGAAAACATACTGGCGCGCGACCATTCGTTTGTTCGATTTGTAACCATGGTTTCACGACATCATCTTCTTTGACGAAACATAAAAGAATTCATAGTGGCGAAAAACCGTATGAGTGTGAAGTTTGTAAGATGAAATTCTCGCGCAGCGGGATTCTCGCTCGCCATAAACGTACGCACACTGGCGAAAAACCATATGTGTGTAAGTTCTGCGCAAAAGCTTTCGCGCAGAGTAACGATTTAAGCTCTCATTTACGTATCCATACCGGCGAAAAGCCTTTTATTTGTGATGTTTGTGGCCAGGCTTTCCGGCAAAGTTCTGCTTTGAAAACACATAAGAAGACCCATATGGACCGCACGCAGATTCTTATTAGCCATACGCACCCCCATTCGCACCCGCATATGGATGCGAGAGCCCAGTTGCTTGACAACAAAACTGCTATTTCCATGATGCACAcTATCGAATCAAAACAGCATAAAAAGACCCATCATAATAAAGACAACCTGACTTGTAAGCTCTGCAACAAAATGTTCTCTCGAGCTTTTGATGTCCGAAGACACATGACGAAACATACTGGATCCAAACCATATACCTGCAACTTTTGTGATAAAAGTTTCACACAATCTGGAACCCTAACTCAACATTTACGAATTCACGGAGAAACGAACGAAAAAATTAAGATTAACAAGACACGTCTCTGCAGTTACTGTGGCAAATCGTTTAAGGATTCGAGTAGTTTTACAATTCATATTCGCCGTCATACAAACGATAAACCATACAATTGTACTGTATGTTCTTTAAAGTTTGTATCTTCTGGACGTTTAACATCACATATGAGAGTTCATACTCAAGAACGACCATTTATATGTTCTGTTTGTGGAAAGAGATTCGCCCATTCGAGTGTTATTAACTTACACATGAAGACACATACGAATTATCGTCCGTTTCAGTGCGCCGTTTGCGGTAAATCGTTCTCTACGAATTATTGTTTGAATATACACAGTCGACAGCATTCTGGAGAGAGACCACATCTTTGCCAGATTTGCGGGAAAACTTTCTCCGATCCAAAAGTGTTGAAACAACATTCGAAAATTCATTCAGGAGACAAGCCGCATTGTTGCAGTGTTTGCTCGAGGACTTTTGGACGGAAATATCATTTGCAGCAACATTTGAAAACGCATTTGGTGTAA
Protein Sequence
MEEPALSKICRACLTEEGEMKSVFVSDDRSGSPIHLAEMIMAYASVQITLGDGLPDQICLSCADKVSKTYVFKQLCEDSDAFLRERLGRSLLSKKDAENVMEINSDAISIVIKPEFDLEQDHESDDDFGNDNIETLDDAFQDDDKNSDREDNDSDSDYSPKKSSYKCEVCKKAFNKQSLLNKHKSMHCNIRAHICDICKRCYTRADQLFRHKLTHADAVLDKIKLEGDLIEAKEEIIETVELEAEEGEDKEKYNCAVCEKEFTKKESLSSHMRTHMKGQKEKDKVLVCHVCSKKFMKPSHLTRHLKIHASVKAHVCNLCNKGFARGEQLMNHMNVHSGIKPHVCNVCNKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHTIRHSGIKAHLCSICGNGFASKGELGAHLRKHTGARPFVCSICNHGFTTSSSLTKHKRIHSGEKPYECEVCKMKFSRSGILARHKRTHTGEKPYVCKFCAKAFAQSNDLSSHLRIHTGEKPFICDVCGQAFRQSSALKTHKKTHMDRTQILISHTHPHSHPHMDARAQLLDNKTAISMMHTIESKQHKKTHHNKDNLTCKLCNKMFSRAFDVRRHMTKHTGSKPYTCNFCDKSFTQSGTLTQHLRIHGETNEKIKINKTRLCSYCGKSFKDSSSFTIHIRRHTNDKPYNCTVCSLKFVSSGRLTSHMRVHTQERPFICSVCGKRFAHSSVINLHMKTHTNYRPFQCAVCGKSFSTNYCLNIHSRQHSGERPHLCQICGKTFSDPKVLKQHSKIHSGDKPHCCSVCSRTFGRKYHLQQHLKTHLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-