Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.009 12 7.8 0.1 14 41 83 107 76 108 0.82

2 6 0.009 13 7.8 0.6 6 39 108 139 107 143 0.75

3 6 0.00053 0.74 11.7 5.3 13 41 151 176 137 177 0.84

4 6 0.00066 0.92 11.4 3.0 14 41 186 210 181 218 0.83

5 6 0.14 1.9e+02 4.0 0.5 32 41 223 232 214 234 0.85

6 6 0.0042 5.8 8.9 1.6 16 41 248 270 241 274 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.009	12	7.8	0.1	14	41	83	107	76	108	0.82
2	6	0.009	13	7.8	0.6	6	39	108	139	107	143	0.75
3	6	0.00053	0.74	11.7	5.3	13	41	151	176	137	177	0.84
4	6	0.00066	0.92	11.4	3.0	14	41	186	210	181	218	0.83
5	6	0.14	1.9e+02	4.0	0.5	32	41	223	232	214	234	0.85
6	6	0.0042	5.8	8.9	1.6	16	41	248	270	241	274	0.83

Coding Sequence: atGGATAATTTGCACGGAGAAGCGACCGAGGATGCGCAGAGGAATAGGAACACCATTGCGCAAGATGGAGACAACACTGACAAAATGGTCGCCAGTACGTCGGGTCTCGGTGAAAAATCCGCAGAATCCAATAATATTGTGCAAGAAGAatcgtataataaaaatttggaagaAGTTtgcattaaacaagaaaattctACGGATTCCGAGCGTAGCAACGATTTACAAGACGCAACAAAAGACGAAACAACAATTCTTGAGTGTTTAACATGTCCAGCATATTTTGCAGATAGTCAAAATTTGATACGACACATGAGGACTCATTTTATTGAGTATGACGAAAATAAACTGCAATGTCCAATTTGTAGTAGATTTATAGATCGTATCAATTTGAACACACATTTGAATGATCATATCAAAACGCACAGTGAACAGAAGATTTCACATgaatcgaaaaaaatacataaatgtcCAATTTGTAATAAAACCTCTTCAGATAGTAGCAACATGAAGCGACACATTAGAACGCATGATAAGAGTTATAAACGCGTACCTACCAAAACTTACAAATGTACAGTTTGCAACAAAACTTCTACTGATAGTAGCAATATGAAACGACACTTGAAGAAACATTTCGGAATTAGAGATTTCCACTGCAGTttatACAGTAGCAACATGAAGCGACACATTCAAACTCACAAAGATTCCAAAGAAAAAGATATTCCTAAAGATCCAAAAAGAAATTATCAATGCCATGTTTGTGGCAAAGTATCTACTGATAACAGTAATATGAAAAGGCATAttaaaacacatacacacatacaaaacGGCCGAAAGAAGTCCCACATTaaacataacaaaaatgaaaCAAGTGCAACAGATACAAATGAAAATGCCGTACAAGAAAAGAGTTATGAGAACTGTGaagatattaaagaagaaccaaAGGAATATTCTACACATATTGaagatatttcaataaaagaaGAATATATGGAAGAAAACTCCAATGatcgtatattttataatgacataGTGCAAACTATAACAAAAGAGGATAAGACATTTGATGATCGCGAACACAAATGA
Protein Sequence: MDNLHGEATEDAQRNRNTIAQDGDNTDKMVASTSGLGEKSAESNNIVQEESYNKNLEEVCIKQENSTDSERSNDLQDATKDETTILECLTCPAYFADSQNLIRHMRTHFIEYDENKLQCPICSRFIDRINLNTHLNDHIKTHSEQKISHESKKIHKCPICNKTSSDSSNMKRHIRTHDKSYKRVPTKTYKCTVCNKTSTDSSNMKRHLKKHFGIRDFHCSLYSSNMKRHIQTHKDSKEKDIPKDPKRNYQCHVCGKVSTDNSNMKRHIKTHTHIQNGRKKSHIKHNKNETSATDTNENAVQEKSYENCEDIKEEPKEYSTHIEDISIKEEYMEENSNDRIFYNDIVQTITKEDKTFDDREHK

Sequence clustering based on sequence similarity using MMseqs2